Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVL entry

There is 1 chain in PDB entry 1PVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1PVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
202 206Right-handed 310
Helix 2
H2
A
209 213Right-handed 310
Helix 3
H3
A
214 219Right-handed alpha
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There are 6 sheets in PDB entry 1PVL. Click on sheet of interest to get list of strands forming it: S1, SA, SR1, SR2, SR3, ST1,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 12first strand
Strand 2
A
17 27anti-parallel
Strand 3
A
32 43anti-parallel
Strand 4
A
48 60anti-parallel
Strand 5
A
94 100parallel
Strand 6
A
220 232anti-parallel
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There are 8 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 89first strand
Strand 2
A
103 105anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
157 158parallel
Strand 5
A
161 168anti-parallel
Strand 6
A
237 256parallel
Strand 7
A
270 281anti-parallel
Strand 8
A
286 296anti-parallel
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There are 3 strands in SR1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
260 267parallel
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There are 1 strands in SR2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
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There are 1 strands in SR3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
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There are 3 strands in ST1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 118first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
138 147parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il