Analysis of interatomic Contacts of Structural Units in PDB entry:
1PZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PZD entry

There is 1 chain in PDB entry 1PZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 604GLY 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1PZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
608 619Right-handed alpha
Helix 2
2
A
620 624Right-handed 310
Helix 3
3
A
759 762Right-handed 310
Helix 4
4
A
771 780Right-handed alpha
Helix 5
5
A
796 809Right-handed alpha
Helix 6
6
A
862 873Right-handed alpha
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There are 6 sheets in PDB entry 1PZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 632first strand
Strand 2
A
646 654anti-parallel
Strand 3
A
637 638anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 632first strand
Strand 2
A
646 654anti-parallel
Strand 3
A
658 667anti-parallel
Strand 4
A
704 711anti-parallel
Strand 5
A
688 693anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 698first strand
Strand 2
A
672 683anti-parallel
Strand 3
A
722 734anti-parallel
Strand 4
A
747 752anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 698first strand
Strand 2
A
672 683anti-parallel
Strand 3
A
722 734anti-parallel
Strand 4
A
756 758anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
825 834anti-parallel
Strand 3
A
839 848anti-parallel
Strand 4
A
852 860anti-parallel
Strand 5
A
785 791anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
825 834anti-parallel
Strand 3
A
811 812anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il