Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0H entry

There is 1 chain in PDB entry 1Q0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1Q0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
81 90Right-handed alpha
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
106 116Right-handed alpha
Helix 7
7
A
124 142Right-handed alpha
Helix 8
8
A
150 159Right-handed alpha
Helix 9
9
A
161 166Right-handed alpha
Helix 10
10
A
173 176Right-handed 310
Helix 11
11
A
194 201Right-handed 310
Helix 12
12
A
202 208Right-handed alpha
Helix 13
13
A
215 224Right-handed alpha
Helix 14
14
A
225 239Right-handed alpha
Helix 15
15
A
242 244Right-handed 310
Helix 16
16
A
276 286Right-handed alpha
Helix 17
17
A
298 302Right-handed 310
Helix 18
18
A
315 328Right-handed alpha
Helix 19
19
A
328 348Right-handed alpha
Helix 20
20
A
354 367Right-handed alpha
Helix 21
21
A
374 396Right-handed alpha
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There are 2 sheets in PDB entry 1Q0H. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 56parallel
Strand 3
A
28 35parallel
Strand 4
A
2 7parallel
Strand 5
A
96 99parallel
Strand 6
A
119 122parallel
Strand 7
A
146 148parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
178 185parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
267 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il