Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q11 entry

There is 1 chain in PDB entry 1Q11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4PRO 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1Q11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 16Right-handed alpha
Helix 2
2
A
23 34Right-handed alpha
Helix 3
3
A
49 51Right-handed 310
Helix 4
4
A
52 65Right-handed alpha
Helix 5
5
A
75 81Right-handed alpha
Helix 6
6
A
86 108Right-handed alpha
Helix 7
7
A
121 123Right-handed 310
Helix 8
8
A
126 138Right-handed alpha
Helix 9
9
A
141 149Right-handed alpha
Helix 10
10
A
160 177Right-handed alpha
Helix 11
11
A
188 199Right-handed alpha
Helix 12
12
A
200 203Right-handed 310
Helix 13
13
A
237 246Right-handed alpha
Helix 14
14
A
258 267Right-handed alpha
Helix 15
15
A
267 273Right-handed alpha
Helix 16
16
A
280 284Right-handed 310
Helix 17
17
A
291 301Right-handed alpha
Helix 18
18
A
305 328Right-handed alpha
Helix 19
19
A
330 341Right-handed alpha
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There are 2 sheets in PDB entry 1Q11. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
181 185parallel
Strand 4
A
37 43parallel
Strand 5
A
68 74parallel
Strand 6
A
116 119parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
287 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il