Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q8D entry

There is 1 chain in PDB entry 1Q8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 239GLY 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1Q8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
242 252Right-handed alpha
Helix 2
2
A
253 267Right-handed alpha
Helix 3
3
A
278 280Right-handed 310
Helix 4
4
A
281 291Right-handed alpha
Helix 5
5
A
318 320Right-handed 310
Helix 6
6
A
321 334Right-handed alpha
Helix 7
7
A
335 346Right-handed alpha
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There are no sheets in PDB entry 1Q8D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il