Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1Q8H entry
There are 4 chains in PDB entry 1Q8H
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
PRO 13 | LEU 16 |
A
|
PRO 18 | ARG 20 |
A
|
VAL 22 | CYS 23 |
A
|
LEU 25 | ALA 49 |
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There are 3
helices in PDB entry 1Q8H. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 16 |
26 | Right-handed alpha |
Helix 2 |
2 | A
| 26 |
37 | Right-handed alpha |
Helix 3 |
3 | A
| 37 |
47 | Right-handed alpha |
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There are no sheets in PDB entry
1Q8H
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il