Analysis of interatomic Contacts of Structural Units in PDB entry:
1QBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QBK entry

There are 2 chains in PDB entry 1QBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 3VAL 890
C
 GLN 8TYR 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 1QBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
5 10Right-handed alpha
Helix 2
2
B
11 20Right-handed alpha
Helix 3
3
B
23 34Right-handed alpha
Helix 4
4
B
63 68Right-handed alpha
Helix 5
5
B
69 74Right-handed 310
Helix 6
6
B
75 80Right-handed alpha
Helix 7
7
B
88 96Right-handed alpha
Helix 8
8
B
97 101Right-handed 310
Helix 9
9
B
114 119Right-handed alpha
Helix 10
10
B
138 142Right-handed 310
Helix 11
11
B
152 157Right-handed alpha
Helix 12
12
B
159 165Right-handed alpha
Helix 13
13
B
176 181Right-handed alpha
Helix 14
14
B
182 185Right-handed 310
Helix 15
15
B
195 200Right-handed alpha
Helix 16
16
B
201 204Right-handed 310
Helix 17
17
B
211 216Right-handed alpha
Helix 18
18
B
217 222Right-handed alpha
Helix 19
19
B
233 238Right-handed alpha
Helix 20
20
B
269 281Right-handed alpha
Helix 21
21
B
285 290Right-handed 310
Helix 22
22
B
314 319Right-handed alpha
Helix 23
23
B
331 335Right-handed 310
Helix 24
24
B
358 363Right-handed alpha
Helix 25
25
B
375 383Right-handed alpha
Helix 26
26
B
394 405Right-handed alpha
Helix 27
27
B
410 425Right-handed alpha
Helix 28
28
B
428 433Right-handed alpha
Helix 29
29
B
435 447Right-handed alpha
Helix 30
30
B
451 465Right-handed alpha
Helix 31
31
B
465 471Right-handed alpha
Helix 32
32
B
473 478Right-handed alpha
Helix 33
33
B
480 490Right-handed alpha
Helix 34
34
B
493 512Right-handed alpha
Helix 35
35
B
515 517Right-handed 310
Helix 36
36
B
518 530Right-handed alpha
Helix 37
37
B
534 553Right-handed alpha
Helix 38
38
B
554 557Right-handed 310
Helix 39
39
B
558 574Right-handed alpha
Helix 40
40
B
582 597Right-handed alpha
Helix 41
41
B
604 629Right-handed alpha
Helix 42
42
B
638 656Right-handed alpha
Helix 43
43
B
659 665Right-handed alpha
Helix 44
44
B
667 677Right-handed alpha
Helix 45
45
B
680 698Right-handed alpha
Helix 46
46
B
699 704Right-handed 310
Helix 47
47
B
705 716Right-handed alpha
Helix 48
48
B
717 717Right-handed 310
Helix 49
49
B
718 720Right-handed 310
Helix 50
50
B
721 739Right-handed alpha
Helix 51
51
B
740 746Right-handed 310
Helix 52
52
B
747 759Right-handed alpha
Helix 53
53
B
764 782Right-handed alpha
Helix 54
54
B
782 787Right-handed alpha
Helix 55
55
B
788 792Right-handed 310
Helix 56
56
B
793 802Right-handed alpha
Helix 57
57
B
807 824Right-handed alpha
Helix 58
58
B
825 830Right-handed 310
Helix 59
59
B
831 840Right-handed alpha
Helix 60
60
B
846 865Right-handed alpha
Helix 61
61
B
865 875Right-handed alpha
Helix 62
62
B
877 888Right-handed alpha
Helix 63
63
C
22 32Right-handed alpha
Helix 64
64
C
101 110Right-handed alpha
Helix 65
65
C
132 136Right-handed 310
Helix 66
66
C
137 142Right-handed alpha
Helix 67
67
C
158 169Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1QBK.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 54first strand
Strand 2
C
57 65anti-parallel
Strand 3
C
12 15parallel
Strand 4
C
85 89parallel
Strand 5
C
117 121parallel
Strand 6
C
146 148parallel
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