Analysis of interatomic Contacts of Structural Units in PDB entry:
1QDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QDR entry

There is 1 chain in PDB entry 1QDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 40GLN 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1QDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 72Right-handed alpha
Helix 2
2
A
74 83Right-handed alpha
Helix 3
3
A
88 98Right-handed alpha
Helix 4
4
A
112 122Right-handed alpha
Helix 5
5
A
123 137Right-handed alpha
Helix 6
6
A
137 149Right-handed alpha
Helix 7
7
A
151 164Right-handed alpha
Helix 8
8
A
174 184Right-handed alpha
Helix 9
9
A
185 187Right-handed 310
Helix 10
10
A
188 206Right-handed alpha
Helix 11
11
A
209 212Right-handed 310
Helix 12
12
A
227 235Right-handed alpha
Helix 13
13
A
248 263Right-handed alpha
Helix 14
14
A
292 298Right-handed alpha
Helix 15
15
A
329 336Right-handed alpha
Helix 16
16
A
341 361Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1QDR. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 291first strand
Strand 2
A
311 318anti-parallel
Strand 3
A
323 328anti-parallel
Strand 4
A
272 276anti-parallel
Strand 5
A
301 302anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il