Analysis of interatomic Contacts of Structural Units in PDB entry:
1QJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QJQ entry

There is 1 chain in PDB entry 1QJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 19PHE 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1QJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 46Right-handed 310
Helix 2
2
A
55 62Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
122 124Right-handed 310
Helix 6
6
A
136 141Right-handed alpha
Helix 7
7
A
320 324Right-handed 310
Helix 8
8
A
326 331Right-handed alpha
Helix 9
9
A
336 338Right-handed 310
Helix 10
10
A
678 681Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1QJQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
104 106parallel
Back to list of sheets
Back to top of page

There are 23 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 181first strand
Strand 2
A
161 169anti-parallel
Strand 3
A
716 724anti-parallel
Strand 4
A
686 692anti-parallel
Strand 5
A
666 676anti-parallel
Strand 6
A
641 650anti-parallel
Strand 7
A
623 632anti-parallel
Strand 8
A
593 608anti-parallel
Strand 9
A
574 587anti-parallel
Strand 10
A
546 559anti-parallel
Strand 11
A
527 539anti-parallel
Strand 12
A
501 512anti-parallel
Strand 13
A
478 496anti-parallel
Strand 14
A
456 473anti-parallel
Strand 15
A
431 452anti-parallel
Strand 16
A
371 392anti-parallel
Strand 17
A
343 363anti-parallel
Strand 18
A
294 314anti-parallel
Strand 19
A
274 289anti-parallel
Strand 20
A
227 238anti-parallel
Strand 21
A
209 221anti-parallel
Strand 22
A
190 202anti-parallel
Strand 23
A
174 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 367first strand
Strand 2
A
370 387anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 703first strand
Strand 2
A
709 711anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il