Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMN entry

There is 1 chain in PDB entry 1QMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 26GLN 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1QMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 45Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
88 104Right-handed alpha
Helix 6
6
A
127 139Right-handed alpha
Helix 7
7
A
146 148Right-handed 310
Helix 8
8
A
149 161Right-handed alpha
Helix 9
9
A
199 203Right-handed 310
Helix 10
10
A
259 265Right-handed alpha
Helix 11
11
A
268 278Right-handed alpha
Helix 12
12
A
299 306Right-handed alpha
Helix 13
13
A
309 313Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1QMN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
386 392anti-parallel
Strand 3
A
374 380anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
237 243anti-parallel
Strand 6
A
226 232anti-parallel
Strand 7
A
279 283anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
111 121parallel
Strand 3
A
182 191anti-parallel
Strand 4
A
164 171anti-parallel
Strand 5
A
327 340anti-parallel
Strand 6
A
291 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
215 224anti-parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
367 369parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il