Analysis of interatomic Contacts of Structural Units in PDB entry:
1QO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QO0 entry

There are 4 chains in PDB entry 1QO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7MET 379
B
 ARG 7GLY 380
D
 SER 2LEU 190
E
 SER 2SER 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 1QO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 41Right-handed alpha
Helix 2
2
A
59 74Right-handed alpha
Helix 3
3
A
84 99Right-handed alpha
Helix 4
4
A
123 126Right-handed 310
Helix 5
5
A
127 139Right-handed alpha
Helix 6
6
A
150 166Right-handed alpha
Helix 7
7
A
182 197Right-handed alpha
Helix 8
8
A
209 222Right-handed alpha
Helix 9
9
A
235 240Right-handed alpha
Helix 10
10
A
243 248Right-handed alpha
Helix 11
11
A
262 276Right-handed alpha
Helix 12
12
A
283 304Right-handed alpha
Helix 13
13
A
307 316Right-handed alpha
Helix 14
14
A
371 379Right-handed 310
Helix 15
15
B
20 41Right-handed alpha
Helix 16
16
B
59 74Right-handed alpha
Helix 17
17
B
84 99Right-handed alpha
Helix 18
18
B
123 126Right-handed 310
Helix 19
19
B
127 139Right-handed alpha
Helix 20
20
B
150 167Right-handed alpha
Helix 21
21
B
182 197Right-handed alpha
Helix 22
22
B
209 221Right-handed alpha
Helix 23
23
B
235 240Right-handed alpha
Helix 24
24
B
243 248Right-handed alpha
Helix 25
25
B
262 274Right-handed alpha
Helix 26
26
B
283 304Right-handed alpha
Helix 27
27
B
307 314Right-handed alpha
Helix 28
28
B
371 374Right-handed 310
Helix 29
29
B
375 380Right-handed alpha
Helix 30
30
D
2 9Right-handed alpha
Helix 31
31
D
10 12Right-handed 310
Helix 32
32
D
22 36Right-handed alpha
Helix 33
33
D
64 76Right-handed alpha
Helix 34
34
D
90 101Right-handed alpha
Helix 35
35
D
111 113Right-handed 310
Helix 36
36
D
114 161Right-handed alpha
Helix 37
37
D
163 176Right-handed alpha
Helix 38
38
D
181 190Right-handed alpha
Helix 39
39
E
2 10Right-handed alpha
Helix 40
40
E
22 36Right-handed alpha
Helix 41
41
E
64 76Right-handed alpha
Helix 42
42
E
90 101Right-handed alpha
Helix 43
43
E
111 113Right-handed 310
Helix 44
44
E
114 161Right-handed alpha
Helix 45
45
E
163 177Right-handed alpha
Helix 46
46
E
181 190Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1QO0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
9 13parallel
Strand 3
A
78 81parallel
Strand 4
A
101 104parallel
Strand 5
A
117 119parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
200 204parallel
Strand 3
A
142 148parallel
Strand 4
A
170 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
351 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
9 13parallel
Strand 3
B
78 81parallel
Strand 4
B
101 104parallel
Strand 5
B
117 119parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
200 204parallel
Strand 3
B
142 148parallel
Strand 4
B
170 177parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
351 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 322first strand
Strand 2
B
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 42first strand
Strand 2
D
14 18parallel
Strand 3
D
55 59parallel
Strand 4
D
81 86parallel
Strand 5
D
104 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 42first strand
Strand 2
E
14 18parallel
Strand 3
E
55 59parallel
Strand 4
E
81 86parallel
Strand 5
E
104 107parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il