Analysis of interatomic Contacts of Structural Units in PDB entry:
1QYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QYE entry

There is 1 chain in PDB entry 1QYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 72ASN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1QYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 93Right-handed alpha
Helix 2
2
A
98 122Right-handed alpha
Helix 3
3
A
140 142Right-handed 310
Helix 4
4
A
155 165Right-handed alpha
Helix 5
5
A
170 184Right-handed alpha
Helix 6
6
A
188 195Right-handed alpha
Helix 7
7
A
197 204Right-handed 310
Helix 8
8
A
253 259Right-handed 310
Helix 9
9
A
260 271Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1QYE.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
206 214anti-parallel
Strand 5
A
244 251anti-parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
134 139anti-parallel
Strand 8
A
279 284parallel
Strand 9
A
331 335anti-parallel
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