Analysis of interatomic Contacts of Structural Units in PDB entry:
1QZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QZE entry

There is 1 chain in PDB entry 1QZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1PHE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1QZE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
160 172Right-handed alpha
Helix 3
3
A
177 187Right-handed alpha
Helix 4
4
A
190 200Right-handed alpha
Helix 5
5
A
232 237Right-handed alpha
Helix 6
6
A
238 247Right-handed alpha
Helix 7
7
A
248 251Right-handed 310
Helix 8
8
A
253 261Right-handed alpha
Helix 9
9
A
266 283Right-handed alpha
Helix 10
10
A
320 331Right-handed alpha
Helix 11
11
A
334 341Right-handed alpha
Helix 12
12
A
349 359Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1QZE.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 17first strand
Strand 2
A
5 9anti-parallel
Strand 3
A
72 77parallel
Strand 4
A
45 49anti-parallel
Strand 5
A
54 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il