Analysis of interatomic Contacts of Structural Units in PDB entry:
1QZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QZJ entry

There is 1 chain in PDB entry 1QZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 576THR 932
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1QZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
585 587Right-handed 310
Helix 2
2
A
630 635Right-handed alpha
Helix 3
3
A
635 648Right-handed alpha
Helix 4
4
A
679 685Right-handed alpha
Helix 5
5
A
727 732Right-handed 310
Helix 6
6
A
735 739Right-handed 310
Helix 7
7
A
767 769Right-handed 310
Helix 8
8
A
770 786Right-handed alpha
Helix 9
9
A
825 829Right-handed 310
Helix 10
10
A
838 843Right-handed alpha
Helix 11
11
A
849 864Right-handed alpha
Helix 12
12
A
876 883Right-handed alpha
Helix 13
13
A
884 886Right-handed 310
Helix 14
14
A
896 907Right-handed alpha
Helix 15
15
A
916 931Right-handed alpha
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There are 3 sheets in PDB entry 1QZJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 598first strand
Strand 2
A
601 608anti-parallel
Strand 3
A
618 625anti-parallel
Strand 4
A
667 670anti-parallel
Strand 5
A
656 660anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 677first strand
Strand 2
A
798 800anti-parallel
Strand 3
A
806 808anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
703 704anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il