Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1R1G entry
There are 10 chains in PDB entry 1R1G
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 2 | VAL 10 |
A
|
CYS 12 | GLY 20 |
A
|
CYS 22 | SER 25 |
A
|
CYS 27 | CYS 27 |
A
|
CYS 29 | TYR 30 |
B
|
ALA 2 | VAL 10 |
B
|
CYS 12 | GLY 20 |
B
|
CYS 22 | SER 25 |
B
|
CYS 27 | CYS 27 |
B
|
CYS 29 | TYR 30 |
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There are 2
helices in PDB entry 1R1G. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 4 |
15 | Right-handed alpha |
Helix 2 |
2 | B
| 4 |
15 | Right-handed alpha |
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There are
2 sheets in PDB entry 1R1G. Click on sheet of
interest to get list of strands forming it:
A,
B,
There are 2
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 19 |
23 | first strand |
Strand 2 |
A
| 26 |
30 | anti-parallel |
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There are 2
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 19 |
23 | first strand |
Strand 2 |
B
| 26 |
30 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il