Analysis of interatomic Contacts of Structural Units in PDB entry:
1R1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R1M entry

There is 1 chain in PDB entry 1R1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 68VAL 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1R1M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
79 84Right-handed alpha
Helix 2
2
A
91 106Right-handed alpha
Helix 3
3
A
124 146Right-handed alpha
Helix 4
4
A
149 151Right-handed 310
Helix 5
5
A
165 175Right-handed alpha
Helix 6
6
A
183 193Right-handed alpha
Helix 7
7
A
194 196Right-handed 310
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There is 1 sheet ( A) in PDB entry 1R1M.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 78first strand
Strand 2
A
198 206anti-parallel
Strand 3
A
110 118anti-parallel
Strand 4
A
153 157parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il