Analysis of interatomic Contacts of Structural Units in PDB entry:
1R5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1R5M entry

There is 1 chain in PDB entry 1R5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 146GLY 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1R5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
337 339Right-handed 310
Helix 2
2
A
471 476Right-handed alpha
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There are 8 sheets in PDB entry 1R5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
496 500parallel
Strand 3
A
466 470anti-parallel
Strand 4
A
456 461anti-parallel
Strand 5
A
445 450anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
531 534anti-parallel
Strand 3
A
520 525anti-parallel
Strand 4
A
509 514anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
181 188anti-parallel
Strand 4
A
199 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
234 239anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
253 257anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
294 299anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
341 345anti-parallel
Strand 4
A
353 355anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 368first strand
Strand 2
A
373 378anti-parallel
Strand 3
A
383 386anti-parallel
Strand 4
A
395 397anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 410first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
433 439anti-parallel
Strand 5
A
492 493parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il