Analysis of interatomic Contacts of Structural Units in PDB entry:
1RDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RDP entry

There are 5 chains in PDB entry 1RDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 THR 1ASN 103
E
 THR 1ASN 103
F
 THR 1ASN 103
G
 THR 1ASN 103
H
 THR 1ASN 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1RDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
4 10Right-handed alpha
Helix 2
2
D
58 79Right-handed alpha
Helix 3
3
E
4 10Right-handed alpha
Helix 4
4
E
60 79Right-handed alpha
Helix 5
5
F
4 10Right-handed alpha
Helix 6
6
F
60 79Right-handed alpha
Helix 7
7
G
4 10Right-handed alpha
Helix 8
8
G
60 79Right-handed alpha
Helix 9
9
H
4 11Right-handed alpha
Helix 10
10
H
60 79Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1RDP.

There are 39 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 22first strand
Strand 2
D
82 88anti-parallel
Strand 3
D
94 102anti-parallel
Strand 4
E
26 30anti-parallel
Strand 5
E
38 41anti-parallel
Strand 6
E
47 50anti-parallel
Strand 7
E
94 102parallel
Strand 8
E
82 88anti-parallel
Strand 9
E
15 22anti-parallel
Strand 10
E
82 88anti-parallel
Strand 11
E
94 102anti-parallel
Strand 12
F
26 30anti-parallel
Strand 13
F
38 41anti-parallel
Strand 14
F
47 50anti-parallel
Strand 15
F
94 102parallel
Strand 16
F
81 88anti-parallel
Strand 17
F
15 23anti-parallel
Strand 18
F
81 88anti-parallel
Strand 19
F
94 102anti-parallel
Strand 20
G
26 30anti-parallel
Strand 21
G
37 41anti-parallel
Strand 22
G
47 50anti-parallel
Strand 23
G
94 102parallel
Strand 24
G
82 88anti-parallel
Strand 25
G
15 22anti-parallel
Strand 26
G
82 88anti-parallel
Strand 27
G
94 102anti-parallel
Strand 28
H
26 30anti-parallel
Strand 29
H
37 41anti-parallel
Strand 30
H
47 50anti-parallel
Strand 31
H
94 102parallel
Strand 32
H
82 88anti-parallel
Strand 33
H
15 22anti-parallel
Strand 34
H
82 88anti-parallel
Strand 35
H
94 102anti-parallel
Strand 36
D
26 30anti-parallel
Strand 37
D
38 41anti-parallel
Strand 38
D
47 50anti-parallel
Strand 39
D
94 102parallel
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