Analysis of interatomic Contacts of Structural Units in PDB entry:
1RE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RE0 entry

There are 2 chains in PDB entry 1RE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 18ASN 179
B
 GLY 95HIS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1RE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 39Right-handed alpha
Helix 2
2
A
71 77Right-handed 310
Helix 3
3
A
78 83Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
135 143Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
165 179Right-handed alpha
Helix 9
9
B
97 116Right-handed alpha
Helix 10
10
B
116 127Right-handed alpha
Helix 11
11
B
134 146Right-handed alpha
Helix 12
12
B
147 149Right-handed 310
Helix 13
13
B
150 159Right-handed alpha
Helix 14
14
B
160 162Right-handed 310
Helix 15
15
B
163 172Right-handed alpha
Helix 16
16
B
180 189Right-handed alpha
Helix 17
17
B
197 215Right-handed alpha
Helix 18
18
B
247 267Right-handed alpha
Helix 19
19
B
275 283Right-handed alpha
Helix 20
20
B
293 307Right-handed alpha
Helix 21
21
B
311 315Right-handed 310
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There is 1 sheet ( A) in PDB entry 1RE0.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
19 24parallel
Strand 4
A
85 93parallel
Strand 5
A
120 126parallel
Strand 6
A
153 157parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il