Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RJ7 entry

There are 12 chains in PDB entry 1RJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 247	ALA 390
B	GLN 247	ALA 390
D	GLN 247	ALA 390
E	GLY 242	ALA 390
F	GLN 247	ALA 390
G	GLN 247	ALA 390
H	GLN 247	ALA 388
I	GLN 247	PRO 389
J	PRO 248	ALA 390
K	GLN 247	SER 391
L	ASN 246	ALA 390
M	GLN 247	ALA 390

There are 13 helices in PDB entry 1RJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	262	266	Right-handed alpha
Helix 2	2	B	262	266	Right-handed alpha
Helix 3	3	D	262	266	Right-handed alpha
Helix 4	4	E	262	266	Right-handed alpha
Helix 5	5	F	262	266	Right-handed alpha
Helix 6	6	G	262	266	Right-handed alpha
Helix 7	7	H	262	266	Right-handed alpha
Helix 8	8	I	262	266	Right-handed alpha
Helix 9	9	I	267	270	Right-handed 310
Helix 10	10	J	262	266	Right-handed alpha
Helix 11	11	K	262	266	Right-handed alpha
Helix 12	12	L	262	266	Right-handed alpha
Helix 13	13	M	262	266	Right-handed alpha

There are 36 sheets in PDB entry 1RJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	369	372	anti-parallel
Strand 3	A	299	312	anti-parallel
Strand 4	A	379	386	anti-parallel
Strand 5	A	249	255	anti-parallel
Strand 6	A	274	279	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	369	372	anti-parallel
Strand 3	A	299	312	anti-parallel
Strand 4	A	344	354	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	359	364	anti-parallel
Strand 4	A	318	324	anti-parallel
Strand 5	A	327	334	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	369	372	anti-parallel
Strand 3	B	299	312	anti-parallel
Strand 4	B	379	386	anti-parallel
Strand 5	B	249	255	anti-parallel
Strand 6	B	274	279	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	369	372	anti-parallel
Strand 3	B	299	312	anti-parallel
Strand 4	B	344	354	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	359	364	anti-parallel
Strand 4	B	317	324	anti-parallel
Strand 5	B	327	335	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	370	372	anti-parallel
Strand 3	D	299	311	anti-parallel
Strand 4	D	379	386	anti-parallel
Strand 5	D	249	255	anti-parallel
Strand 6	D	274	279	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	370	372	anti-parallel
Strand 3	D	299	311	anti-parallel
Strand 4	D	344	354	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	292	295	anti-parallel
Strand 3	D	359	364	anti-parallel
Strand 4	D	317	324	anti-parallel
Strand 5	D	327	335	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	368	371	anti-parallel
Strand 3	E	299	313	anti-parallel
Strand 4	E	379	386	anti-parallel
Strand 5	E	249	255	anti-parallel
Strand 6	E	274	279	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	368	371	anti-parallel
Strand 3	E	299	313	anti-parallel
Strand 4	E	344	354	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	287	first strand
Strand 2	E	292	295	anti-parallel
Strand 3	E	359	364	anti-parallel
Strand 4	E	317	324	anti-parallel
Strand 5	E	327	335	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	261	first strand
Strand 2	F	368	373	anti-parallel
Strand 3	F	299	313	anti-parallel
Strand 4	F	379	386	anti-parallel
Strand 5	F	249	255	anti-parallel
Strand 6	F	274	279	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	261	first strand
Strand 2	F	368	373	anti-parallel
Strand 3	F	299	313	anti-parallel
Strand 4	F	344	354	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	287	first strand
Strand 2	F	292	295	anti-parallel
Strand 3	F	359	364	anti-parallel
Strand 4	F	317	324	anti-parallel
Strand 5	F	327	335	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	369	372	anti-parallel
Strand 3	G	299	312	anti-parallel
Strand 4	G	379	386	anti-parallel
Strand 5	G	249	255	anti-parallel
Strand 6	G	274	279	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	369	372	anti-parallel
Strand 3	G	299	312	anti-parallel
Strand 4	G	344	354	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	286	first strand
Strand 2	G	293	295	anti-parallel
Strand 3	G	359	364	anti-parallel
Strand 4	G	318	324	anti-parallel
Strand 5	G	327	334	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	259	261	first strand
Strand 2	H	368	372	anti-parallel
Strand 3	H	299	313	anti-parallel
Strand 4	H	379	386	anti-parallel
Strand 5	H	249	255	anti-parallel
Strand 6	H	274	279	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	259	261	first strand
Strand 2	H	368	372	anti-parallel
Strand 3	H	299	313	anti-parallel
Strand 4	H	344	354	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	284	287	first strand
Strand 2	H	292	295	anti-parallel
Strand 3	H	359	364	anti-parallel
Strand 4	H	317	324	anti-parallel
Strand 5	H	327	335	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	260	261	first strand
Strand 2	I	368	372	anti-parallel
Strand 3	I	299	313	anti-parallel
Strand 4	I	379	386	anti-parallel
Strand 5	I	249	255	anti-parallel
Strand 6	I	274	279	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	260	261	first strand
Strand 2	I	368	372	anti-parallel
Strand 3	I	299	313	anti-parallel
Strand 4	I	344	354	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	287	first strand
Strand 2	I	292	295	anti-parallel
Strand 3	I	359	364	anti-parallel
Strand 4	I	318	324	anti-parallel
Strand 5	I	327	334	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	250	254	first strand
Strand 2	J	379	386	anti-parallel
Strand 3	J	299	313	anti-parallel
Strand 4	J	368	372	anti-parallel
Strand 5	J	259	261	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	250	254	first strand
Strand 2	J	379	386	anti-parallel
Strand 3	J	299	313	anti-parallel
Strand 4	J	344	354	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	284	287	first strand
Strand 2	J	292	295	anti-parallel
Strand 3	J	359	364	anti-parallel
Strand 4	J	317	324	anti-parallel
Strand 5	J	327	335	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	369	372	anti-parallel
Strand 3	K	299	312	anti-parallel
Strand 4	K	379	386	anti-parallel
Strand 5	K	249	255	anti-parallel
Strand 6	K	274	279	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	369	372	anti-parallel
Strand 3	K	299	312	anti-parallel
Strand 4	K	344	354	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	284	287	first strand
Strand 2	K	292	295	anti-parallel
Strand 3	K	359	364	anti-parallel
Strand 4	K	318	324	anti-parallel
Strand 5	K	327	334	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	259	261	first strand
Strand 2	L	368	372	anti-parallel
Strand 3	L	299	313	anti-parallel
Strand 4	L	379	386	anti-parallel
Strand 5	L	249	255	anti-parallel
Strand 6	L	274	279	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	259	261	first strand
Strand 2	L	368	372	anti-parallel
Strand 3	L	299	313	anti-parallel
Strand 4	L	344	354	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	284	287	first strand
Strand 2	L	292	295	anti-parallel
Strand 3	L	359	364	anti-parallel
Strand 4	L	317	324	anti-parallel
Strand 5	L	327	335	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	259	261	first strand
Strand 2	M	368	372	anti-parallel
Strand 3	M	299	313	anti-parallel
Strand 4	M	379	386	anti-parallel
Strand 5	M	249	254	anti-parallel
Strand 6	M	275	279	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	259	261	first strand
Strand 2	M	368	372	anti-parallel
Strand 3	M	299	313	anti-parallel
Strand 4	M	344	354	anti-parallel

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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	284	286	first strand
Strand 2	M	293	295	anti-parallel
Strand 3	M	359	364	anti-parallel
Strand 4	M	317	324	anti-parallel
Strand 5	M	327	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJ7