Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1RJW entry

There are 4 chains in PDB entry 1RJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 339
B	MET 1	LYS 339
C	MET 1	LYS 339
D	MET 1	LYS 339

There are 58 helices in PDB entry 1RJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	47	Right-handed alpha
Helix 2	2	A	95	100	Right-handed alpha
Helix 3	3	A	101	101	Right-handed 310
Helix 4	4	A	102	106	Right-handed 310
Helix 5	5	A	129	131	Right-handed 310
Helix 6	6	A	139	144	Right-handed alpha
Helix 7	7	A	145	147	Right-handed 310
Helix 8	8	A	148	161	Right-handed alpha
Helix 9	9	A	176	187	Right-handed alpha
Helix 10	10	A	197	207	Right-handed alpha
Helix 11	11	A	219	229	Right-handed alpha
Helix 12	12	A	240	250	Right-handed alpha
Helix 13	13	A	271	277	Right-handed alpha
Helix 14	14	A	288	301	Right-handed alpha
Helix 15	15	A	315	325	Right-handed alpha
Helix 16	16	B	38	47	Right-handed alpha
Helix 17	17	B	95	100	Right-handed alpha
Helix 18	18	B	102	106	Right-handed 310
Helix 19	19	B	129	131	Right-handed 310
Helix 20	20	B	139	144	Right-handed alpha
Helix 21	21	B	145	147	Right-handed 310
Helix 22	22	B	148	161	Right-handed alpha
Helix 23	23	B	176	187	Right-handed alpha
Helix 24	24	B	197	207	Right-handed alpha
Helix 25	25	B	219	229	Right-handed alpha
Helix 26	26	B	240	250	Right-handed alpha
Helix 27	27	B	271	277	Right-handed alpha
Helix 28	28	B	288	301	Right-handed alpha
Helix 29	29	B	315	325	Right-handed alpha
Helix 30	30	C	38	47	Right-handed alpha
Helix 31	31	C	95	100	Right-handed alpha
Helix 32	32	C	102	106	Right-handed 310
Helix 33	33	C	129	131	Right-handed 310
Helix 34	34	C	139	144	Right-handed alpha
Helix 35	35	C	145	147	Right-handed 310
Helix 36	36	C	148	161	Right-handed alpha
Helix 37	37	C	176	187	Right-handed alpha
Helix 38	38	C	197	207	Right-handed alpha
Helix 39	39	C	219	229	Right-handed alpha
Helix 40	40	C	240	250	Right-handed alpha
Helix 41	41	C	271	277	Right-handed alpha
Helix 42	42	C	288	301	Right-handed alpha
Helix 43	43	C	315	325	Right-handed alpha
Helix 44	44	D	38	46	Right-handed alpha
Helix 45	45	D	95	100	Right-handed alpha
Helix 46	46	D	101	101	Right-handed 310
Helix 47	47	D	102	106	Right-handed 310
Helix 48	48	D	129	131	Right-handed 310
Helix 49	49	D	139	144	Right-handed alpha
Helix 50	50	D	145	147	Right-handed 310
Helix 51	51	D	148	161	Right-handed alpha
Helix 52	52	D	176	187	Right-handed alpha
Helix 53	53	D	197	207	Right-handed alpha
Helix 54	54	D	219	229	Right-handed alpha
Helix 55	55	D	240	250	Right-handed alpha
Helix 56	56	D	271	277	Right-handed alpha
Helix 57	57	D	288	301	Right-handed alpha
Helix 58	58	D	315	325	Right-handed alpha

There are 20 sheets in PDB entry 1RJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	14	17	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	27	37	anti-parallel
Strand 3	A	63	70	anti-parallel
Strand 4	A	82	85	anti-parallel
Strand 5	A	132	133	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	27	37	anti-parallel
Strand 3	A	331	335	anti-parallel
Strand 4	A	308	312	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	110	111	anti-parallel

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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	190	194	parallel
Strand 3	A	167	171	parallel
Strand 4	A	231	236	parallel
Strand 5	A	251	259	parallel
Strand 6	A	280	283	parallel
Strand 7	D	280	283	anti-parallel
Strand 8	D	251	259	parallel
Strand 9	D	231	236	parallel
Strand 10	D	167	171	parallel
Strand 11	D	190	194	parallel
Strand 12	D	211	213	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	270	first strand
Strand 2	D	266	270	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	14	17	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	63	70	anti-parallel
Strand 4	B	82	85	anti-parallel
Strand 5	B	132	133	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	308	312	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	110	111	anti-parallel

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There are 12 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	190	194	parallel
Strand 3	B	167	171	parallel
Strand 4	B	231	236	parallel
Strand 5	B	251	259	parallel
Strand 6	B	280	283	parallel
Strand 7	C	280	283	anti-parallel
Strand 8	C	251	259	parallel
Strand 9	C	231	236	parallel
Strand 10	C	167	171	parallel
Strand 11	C	190	194	parallel
Strand 12	C	211	213	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	C	266	270	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	14	17	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	63	70	anti-parallel
Strand 4	C	82	85	anti-parallel
Strand 5	C	132	133	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	331	335	anti-parallel
Strand 4	C	308	312	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	110	111	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	14	17	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	63	70	anti-parallel
Strand 4	D	82	85	anti-parallel
Strand 5	D	132	133	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	331	335	anti-parallel
Strand 4	D	308	312	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	110	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1RJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
1RJW