Analysis of interatomic Contacts of Structural Units in PDB entry:
1RMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RMH entry

There are 4 chains in PDB entry 1RMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 165
B
 VAL 2GLU 165
C
 ALA 2PHE 5
D
 ALA 2PHE 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1RMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
25 29Right-handed 310
Helix 2
H2
A
30 41Right-handed alpha
Helix 3
H3
A
119 123Right-handed 310
Helix 4
H4
A
135 142Right-handed alpha
Helix 5
H5
A
143 146Right-handed 310
Helix 6
H6
B
25 29Right-handed 310
Helix 7
H7
B
30 41Right-handed alpha
Helix 8
H8
B
119 123Right-handed 310
Helix 9
H9
B
135 142Right-handed alpha
Helix 10
H10
B
143 146Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1RMH. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
16 24anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
61 64anti-parallel
Strand 5
A
96 101parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
127 134parallel
Strand 8
A
155 164anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
16 24anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
61 64anti-parallel
Strand 5
B
96 101parallel
Strand 6
B
111 116anti-parallel
Strand 7
B
127 134parallel
Strand 8
B
155 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il