Analysis of interatomic Contacts of Structural Units in PDB entry:
1RO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RO8 entry

There are 2 chains in PDB entry 1RO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ILE 258
B
 MSE 1ASN 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1RO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 16Right-handed 310
Helix 2
2
A
17 21Right-handed 310
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
51 53Right-handed 310
Helix 5
5
A
54 68Right-handed alpha
Helix 6
6
A
88 94Right-handed alpha
Helix 7
7
A
94 99Right-handed alpha
Helix 8
8
A
105 110Right-handed alpha
Helix 9
9
A
112 127Right-handed alpha
Helix 10
10
A
131 143Right-handed alpha
Helix 11
11
A
168 174Right-handed alpha
Helix 12
12
A
189 205Right-handed alpha
Helix 13
13
A
215 220Right-handed 310
Helix 14
14
A
247 255Right-handed alpha
Helix 15
15
A
256 258Right-handed 310
Helix 16
16
B
10 15Right-handed 310
Helix 17
17
B
17 21Right-handed 310
Helix 18
18
B
32 36Right-handed 310
Helix 19
19
B
51 53Right-handed 310
Helix 20
20
B
54 68Right-handed alpha
Helix 21
21
B
88 94Right-handed alpha
Helix 22
22
B
94 99Right-handed alpha
Helix 23
23
B
105 110Right-handed alpha
Helix 24
24
B
112 127Right-handed alpha
Helix 25
25
B
131 143Right-handed alpha
Helix 26
26
B
190 205Right-handed alpha
Helix 27
27
B
215 220Right-handed 310
Helix 28
28
B
247 255Right-handed alpha
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There are 3 sheets in PDB entry 1RO8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
72 78parallel
Strand 3
A
44 50parallel
Strand 4
A
26 30parallel
Strand 5
A
3 7parallel
Strand 6
A
147 151parallel
Strand 7
A
207 210parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
234 235anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
72 78parallel
Strand 3
B
44 50parallel
Strand 4
B
26 30parallel
Strand 5
B
3 7parallel
Strand 6
B
147 151parallel
Strand 7
B
207 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il