Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1RPE entry
There are 4 chains in PDB entry 1RPE
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
B
|
T 1 | G 20 |
A
|
A 21 | T 40 |
L
|
SER 1 | THR 63 |
R
|
SER 1 | THR 63 |
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There are 10
helices in PDB entry 1RPE. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
L1 | L
| 1 |
12 | Right-handed alpha |
Helix 2 |
L2 | L
| 17 |
23 | Right-handed alpha |
Helix 3 |
L3 | L
| 28 |
36 | Right-handed alpha |
Helix 4 |
L4 | L
| 45 |
51 | Right-handed alpha |
Helix 5 |
L5 | L
| 56 |
61 | Right-handed alpha |
Helix 6 |
R1 | R
| 1 |
12 | Right-handed alpha |
Helix 7 |
R2 | R
| 17 |
23 | Right-handed alpha |
Helix 8 |
R3 | R
| 28 |
36 | Right-handed alpha |
Helix 9 |
R4 | R
| 45 |
51 | Right-handed alpha |
Helix 10 |
R5 | R
| 56 |
61 | Right-handed alpha |
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There are no sheets in PDB entry
1RPE
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il