Analysis of interatomic Contacts of Structural Units in PDB entry:
1RQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RQG entry

There is 1 chain in PDB entry 1RQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1RQG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
53 64Right-handed alpha
Helix 4
4
A
66 86Right-handed alpha
Helix 5
5
A
97 114Right-handed alpha
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
192 194Right-handed 310
Helix 8
8
A
195 205Right-handed alpha
Helix 9
9
A
209 221Right-handed alpha
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
259 272Right-handed alpha
Helix 12
12
A
278 283Right-handed alpha
Helix 13
13
A
299 305Right-handed alpha
Helix 14
14
A
305 313Right-handed alpha
Helix 15
15
A
354 359Right-handed alpha
Helix 16
16
A
363 374Right-handed alpha
Helix 17
17
A
384 395Right-handed alpha
Helix 18
18
A
399 414Right-handed alpha
Helix 19
19
A
426 449Right-handed alpha
Helix 20
20
A
451 472Right-handed alpha
Helix 21
21
A
474 479Right-handed alpha
Helix 22
22
A
482 505Right-handed alpha
Helix 23
23
A
508 519Right-handed alpha
Helix 24
24
A
549 560Right-handed alpha
Helix 25
25
A
565 577Right-handed alpha
Helix 26
26
A
578 591Right-handed alpha
Helix 27
27
A
594 602Right-handed alpha
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There are 4 sheets in PDB entry 1RQG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 94first strand
Strand 2
A
42 49parallel
Strand 3
A
3 8parallel
Strand 4
A
289 296parallel
Strand 5
A
334 335parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
117 126first strand
Strand 2
A
181 190anti-parallel
Strand 3
A
227 228anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
230 231first strand
Strand 2
A
250 251anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
338 340anti-parallel
Strand 3
A
381 383parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il