Analysis of interatomic Contacts of Structural Units in PDB entry:
1RUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RUT entry

There is 1 chain in PDB entry 1RUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
SER 19ASN 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 1RUT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
X
44 48Right-handed 310
Helix 2
2
X
56 61Right-handed alpha
Helix 3
3
X
73 82Right-handed alpha
Helix 4
4
X
109 113Right-handed 310
Helix 5
5
X
139 141Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1RUT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
41 43first strand
Strand 2
X
34 38anti-parallel
Strand 3
X
323 326anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
70 72first strand
Strand 2
X
63 67anti-parallel
Strand 3
X
319 321anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
85 86first strand
Strand 2
X
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
106 108first strand
Strand 2
X
99 103anti-parallel
Strand 3
X
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
134 137first strand
Strand 2
X
127 131anti-parallel
Strand 3
X
302 303anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il