Analysis of interatomic Contacts of Structural Units in PDB entry:
1S00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S00 entry

There are 6 chains in PDB entry 1S00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
ALA 1GLY 281
M
ALA 1HIS 301
H
ASP 11LEU 256
R
ALA 1GLY 281
S
TYR 3HIS 301
T
ASP 11LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 1S00. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
L
6 10Right-handed 310
Helix 2
2
L
32 57Right-handed alpha
Helix 3
3
L
70 74Right-handed 310
Helix 4
4
L
79 82Right-handed 310
Helix 5
5
L
83 112Right-handed alpha
Helix 6
6
L
115 133Right-handed alpha
Helix 7
7
L
133 140Right-handed alpha
Helix 8
8
L
141 145Right-handed 310
Helix 9
9
L
151 163Right-handed alpha
Helix 10
10
L
164 165Right-handed 310
Helix 11
11
L
166 169Right-handed 310
Helix 12
12
L
170 199Right-handed alpha
Helix 13
13
L
208 221Right-handed alpha
Helix 14
14
L
225 250Right-handed alpha
Helix 15
15
L
258 263Right-handed alpha
Helix 16
16
L
263 268Right-handed alpha
Helix 17
17
M
25 29Right-handed 310
Helix 18
18
M
38 42Right-handed 310
Helix 19
19
M
53 78Right-handed alpha
Helix 20
20
M
81 88Right-handed alpha
Helix 21
21
M
98 102Right-handed 310
Helix 22
22
M
108 111Right-handed 310
Helix 23
23
M
112 140Right-handed alpha
Helix 24
24
M
144 162Right-handed alpha
Helix 25
25
M
162 169Right-handed alpha
Helix 26
26
M
170 174Right-handed 310
Helix 27
27
M
178 193Right-handed alpha
Helix 28
28
M
194 194Right-handed 310
Helix 29
29
M
195 198Right-handed 310
Helix 30
30
M
199 226Right-handed alpha
Helix 31
31
M
227 230Right-handed 310
Helix 32
32
M
233 240Right-handed alpha
Helix 33
33
M
242 257Right-handed alpha
Helix 34
34
M
263 287Right-handed alpha
Helix 35
35
M
293 300Right-handed alpha
Helix 36
36
H
11 35Right-handed alpha
Helix 37
37
H
67 70Right-handed 310
Helix 38
38
H
103 108Right-handed alpha
Helix 39
39
H
109 113Right-handed 310
Helix 40
40
H
135 137Right-handed 310
Helix 41
41
H
194 196Right-handed 310
Helix 42
42
H
209 216Right-handed 310
Helix 43
43
H
226 244Right-handed alpha
Helix 44
44
H
250 255Right-handed alpha
Helix 45
45
R
6 10Right-handed 310
Helix 46
46
R
32 57Right-handed alpha
Helix 47
47
R
70 74Right-handed 310
Helix 48
48
R
83 112Right-handed alpha
Helix 49
49
R
115 133Right-handed alpha
Helix 50
50
R
133 140Right-handed alpha
Helix 51
51
R
141 145Right-handed 310
Helix 52
52
R
151 163Right-handed alpha
Helix 53
53
R
164 165Right-handed 310
Helix 54
54
R
166 169Right-handed 310
Helix 55
55
R
170 199Right-handed alpha
Helix 56
56
R
208 221Right-handed alpha
Helix 57
57
R
225 250Right-handed alpha
Helix 58
58
R
258 263Right-handed alpha
Helix 59
59
R
263 268Right-handed alpha
Helix 60
60
S
25 29Right-handed 310
Helix 61
61
S
36 41Right-handed alpha
Helix 62
62
S
53 78Right-handed alpha
Helix 63
63
S
81 88Right-handed alpha
Helix 64
64
S
98 102Right-handed 310
Helix 65
65
S
108 111Right-handed 310
Helix 66
66
S
112 140Right-handed alpha
Helix 67
67
S
144 162Right-handed alpha
Helix 68
68
S
162 169Right-handed alpha
Helix 69
69
S
170 174Right-handed 310
Helix 70
70
S
178 193Right-handed alpha
Helix 71
71
S
194 194Right-handed 310
Helix 72
72
S
195 198Right-handed 310
Helix 73
73
S
199 226Right-handed alpha
Helix 74
74
S
227 230Right-handed 310
Helix 75
75
S
233 240Right-handed alpha
Helix 76
76
S
242 257Right-handed alpha
Helix 77
77
S
263 287Right-handed alpha
Helix 78
78
S
293 301Right-handed alpha
Helix 79
79
T
11 35Right-handed alpha
Helix 80
80
T
103 108Right-handed alpha
Helix 81
81
T
109 113Right-handed 310
Helix 82
82
T
135 137Right-handed 310
Helix 83
83
T
194 196Right-handed 310
Helix 84
84
T
209 213Right-handed 310
Helix 85
85
T
226 239Right-handed alpha
Helix 86
86
T
239 244Right-handed alpha
Helix 87
87
T
245 248Right-handed 310
Helix 88
88
T
250 255Right-handed alpha
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There are 12 sheets in PDB entry 1S00. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
11 13first strand
Strand 2
H
141 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
62 65first strand
Strand 2
H
72 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
87 89first strand
Strand 2
H
98 100anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
175 182anti-parallel
Strand 4
H
188 192anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
152 155anti-parallel
Strand 4
H
203 205parallel
Strand 5
H
197 198anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
25 26first strand
Strand 2
R
29 30anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
11 13first strand
Strand 2
T
141 144anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
62 64first strand
Strand 2
T
73 75anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
87 89first strand
Strand 2
T
98 100anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
131 133first strand
Strand 2
T
160 170anti-parallel
Strand 3
T
175 182anti-parallel
Strand 4
T
188 192anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
131 133first strand
Strand 2
T
160 170anti-parallel
Strand 3
T
152 154anti-parallel
Strand 4
T
202 204parallel
Strand 5
T
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il