Analysis of interatomic Contacts of Structural Units in PDB entry:
1S11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1S11 entry

There are 2 chains in PDB entry 1S11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 403GLY 543
B
VAL 660CYS 801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1S11. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
447 454Right-handed alpha
Helix 2
2
A
460 473Right-handed alpha
Helix 3
3
A
495 503Right-handed alpha
Helix 4
4
A
516 521Right-handed 310
Helix 5
5
B
665 671Right-handed alpha
Helix 6
6
B
672 676Right-handed 310
Helix 7
7
B
689 699Right-handed alpha
Helix 8
8
B
699 707Right-handed alpha
Helix 9
9
B
713 724Right-handed alpha
Helix 10
10
B
733 741Right-handed alpha
Helix 11
11
B
772 786Right-handed alpha
Helix 12
12
B
788 798Right-handed alpha
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There are 5 sheets in PDB entry 1S11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
429 431first strand
Strand 2
A
440 442anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
489 490first strand
Strand 2
A
493 494anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
523 524first strand
Strand 2
B
766 767anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
731 732first strand
Strand 2
A
530 535anti-parallel
Strand 3
B
758 762anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
681 682first strand
Strand 2
B
726 727parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il