Analysis of interatomic Contacts of Structural Units in PDB entry:
1SGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SGF entry

There are 6 chains in PDB entry 1SGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 25PRO 246
B
GLY 10ARG 118
G
ILE 16PRO 246
X
SER 26ASN 244
Y
HIS 8ARG 118
Z
ILE 16PRO 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1SGF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
56 58Right-handed 310
Helix 2
2
A
95 95Right-handed 310
Helix 3
3
A
165 171Right-handed 310
Helix 4
4
A
232 243Right-handed 310
Helix 5
5
G
24 27Right-handed 310
Helix 6
6
G
56 58Right-handed 310
Helix 7
7
G
95 95Right-handed 310
Helix 8
8
G
165 171Right-handed alpha
Helix 9
9
G
231 243Right-handed 310
Helix 10
10
X
56 58Right-handed 310
Helix 11
11
X
95 95Right-handed 310
Helix 12
12
X
165 171Right-handed 310
Helix 13
13
X
232 242Right-handed 310
Helix 14
14
Z
56 58Right-handed 310
Helix 15
15
Z
165 171Right-handed alpha
Helix 16
16
Z
231 233Right-handed 310
Helix 17
17
Z
235 243Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 1SGF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 45first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
65 68anti-parallel
Strand 4
A
81 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 54first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
158 161first strand
Strand 2
A
135 138anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
208 213anti-parallel
Strand 5
A
226 230anti-parallel
Strand 6
A
180 185anti-parallel
Strand 7
A
160 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 22first strand
Strand 2
B
53 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
27 29first strand
Strand 2
B
35 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
76 92first strand
Strand 2
B
97 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
81 84first strand
Strand 2
G
65 68anti-parallel
Strand 3
G
30 35anti-parallel
Strand 4
G
39 48anti-parallel
Strand 5
G
51 54anti-parallel
Strand 6
G
104 108anti-parallel
Strand 7
G
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
156 161first strand
Strand 2
G
135 140anti-parallel
Strand 3
G
198 201anti-parallel
Strand 4
G
208 215anti-parallel
Strand 5
G
226 230anti-parallel
Strand 6
G
180 184anti-parallel
Strand 7
G
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
81 83first strand
Strand 2
X
64 68anti-parallel
Strand 3
X
30 35anti-parallel
Strand 4
X
42 48anti-parallel
Strand 5
X
51 54anti-parallel
Strand 6
X
104 108anti-parallel
Strand 7
X
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
159 161first strand
Strand 2
X
135 138anti-parallel
Strand 3
X
198 201anti-parallel
Strand 4
X
208 213anti-parallel
Strand 5
X
226 230anti-parallel
Strand 6
X
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
17 22first strand
Strand 2
Y
53 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
35 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
76 93first strand
Strand 2
Y
96 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
81 84first strand
Strand 2
Z
65 68anti-parallel
Strand 3
Z
30 35anti-parallel
Strand 4
Z
39 48anti-parallel
Strand 5
Z
51 54anti-parallel
Strand 6
Z
104 108anti-parallel
Strand 7
Z
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
156 161first strand
Strand 2
Z
135 140anti-parallel
Strand 3
Z
198 201anti-parallel
Strand 4
Z
208 215anti-parallel
Strand 5
Z
226 230anti-parallel
Strand 6
Z
180 184anti-parallel
Strand 7
Z
161 163anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il