Analysis of interatomic Contacts of Structural Units in PDB entry:
1SHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SHJ entry

There are 2 chains in PDB entry 1SHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 57GLN 303
B
VAL 55GLN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1SHJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
79 83Right-handed 310
Helix 2
2
A
89 105Right-handed alpha
Helix 3
3
A
115 129Right-handed alpha
Helix 4
4
A
159 165Right-handed alpha
Helix 5
5
A
171 175Right-handed 310
Helix 6
6
A
239 253Right-handed alpha
Helix 7
7
A
257 272Right-handed alpha
Helix 8
8
B
79 83Right-handed 310
Helix 9
9
B
89 105Right-handed alpha
Helix 10
10
B
115 128Right-handed alpha
Helix 11
11
B
159 164Right-handed alpha
Helix 12
12
B
165 167Right-handed 310
Helix 13
13
B
171 175Right-handed 310
Helix 14
14
B
239 253Right-handed alpha
Helix 15
15
B
257 272Right-handed alpha
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There are 3 sheets in PDB entry 1SHJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
107 112first strand
Strand 2
A
69 74parallel
Strand 3
A
137 144parallel
Strand 4
A
179 186parallel
Strand 5
A
219 225parallel
Strand 6
A
290 293anti-parallel
Strand 7
B
290 293anti-parallel
Strand 8
B
219 224anti-parallel
Strand 9
B
179 186parallel
Strand 10
B
137 144parallel
Strand 11
B
69 74parallel
Strand 12
B
107 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 152first strand
Strand 2
A
155 158anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 151first strand
Strand 2
B
156 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il