Analysis of interatomic Contacts of Structural Units in PDB entry:
1SIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SIJ entry

There is 1 chain in PDB entry 1SIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 907
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1SIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
60 62Right-handed 310
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
75 80Right-handed alpha
Helix 5
5
A
86 95Right-handed alpha
Helix 6
6
A
103 116Right-handed alpha
Helix 7
7
A
122 133Right-handed alpha
Helix 8
8
A
142 157Right-handed alpha
Helix 9
9
A
161 166Right-handed 310
Helix 10
10
A
184 190Right-handed alpha
Helix 11
11
A
195 202Right-handed alpha
Helix 12
12
A
227 232Right-handed alpha
Helix 13
13
A
241 245Right-handed 310
Helix 14
14
A
289 298Right-handed alpha
Helix 15
15
A
312 318Right-handed alpha
Helix 16
16
A
342 350Right-handed alpha
Helix 17
17
A
391 404Right-handed alpha
Helix 18
18
A
406 408Right-handed 310
Helix 19
19
A
422 426Right-handed 310
Helix 20
20
A
429 441Right-handed alpha
Helix 21
21
A
449 456Right-handed alpha
Helix 22
22
A
494 506Right-handed alpha
Helix 23
23
A
536 556Right-handed alpha
Helix 24
24
A
558 567Right-handed alpha
Helix 25
25
A
584 607Right-handed alpha
Helix 26
26
A
656 670Right-handed alpha
Helix 27
27
A
671 673Right-handed 310
Helix 28
28
A
675 677Right-handed 310
Helix 29
29
A
699 720Right-handed alpha
Helix 30
30
A
728 735Right-handed alpha
Helix 31
31
A
800 821Right-handed alpha
Helix 32
32
A
840 844Right-handed 310
Helix 33
33
A
860 864Right-handed 310
Helix 34
34
A
869 873Right-handed 310
Helix 35
35
A
874 888Right-handed alpha
Helix 36
36
A
897 906Right-handed alpha
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There are 7 sheets in PDB entry 1SIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
2 8anti-parallel
Strand 3
A
72 74parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
55 58anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
281 287anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
444 447parallel
Strand 5
A
372 377anti-parallel
Strand 6
A
383 387anti-parallel
Strand 7
A
410 414parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
301 306anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
267 268anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 339first strand
Strand 2
A
515 522anti-parallel
Strand 3
A
477 487parallel
Strand 4
A
463 471anti-parallel
Strand 5
A
352 360anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 623first strand
Strand 2
A
766 778anti-parallel
Strand 3
A
783 794anti-parallel
Strand 4
A
848 852parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 681first strand
Strand 2
A
644 647parallel
Strand 3
A
631 638anti-parallel
Strand 4
A
740 746anti-parallel
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