Analysis of interatomic Contacts of Structural Units in PDB entry:
1SJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SJ9 entry

There are 6 chains in PDB entry 1SJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1004LEU 1253
B
 SER 2004LEU 2253
C
 SER 3004LEU 3253
D
 SER 4004LEU 4253
E
 SER 5004LEU 5253
F
 SER 6004LEU 6253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1SJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1012 1016Right-handed 310
Helix 2
2
A
1027 1029Right-handed 310
Helix 3
3
A
1030 1036Right-handed alpha
Helix 4
4
A
1070 1084Right-handed alpha
Helix 5
5
A
1118 1123Right-handed 310
Helix 6
6
A
1133 1147Right-handed alpha
Helix 7
7
A
1177 1181Right-handed 310
Helix 8
8
A
1182 1191Right-handed alpha
Helix 9
9
A
1198 1208Right-handed alpha
Helix 10
10
A
1239 1253Right-handed alpha
Helix 11
11
B
2030 2036Right-handed alpha
Helix 12
12
B
2070 2083Right-handed alpha
Helix 13
13
B
2118 2123Right-handed 310
Helix 14
14
B
2133 2146Right-handed alpha
Helix 15
15
B
2177 2181Right-handed 310
Helix 16
16
B
2182 2190Right-handed alpha
Helix 17
17
B
2198 2209Right-handed alpha
Helix 18
18
B
2235 2253Right-handed alpha
Helix 19
19
C
3027 3036Right-handed alpha
Helix 20
20
C
3069 3083Right-handed alpha
Helix 21
21
C
3119 3123Right-handed 310
Helix 22
22
C
3133 3147Right-handed alpha
Helix 23
23
C
3177 3181Right-handed 310
Helix 24
24
C
3182 3190Right-handed alpha
Helix 25
25
C
3198 3208Right-handed alpha
Helix 26
26
C
3230 3238Right-handed 310
Helix 27
27
C
3240 3252Right-handed alpha
Helix 28
28
D
4012 4017Right-handed alpha
Helix 29
29
D
4027 4030Right-handed 310
Helix 30
30
D
4031 4037Right-handed alpha
Helix 31
31
D
4069 4084Right-handed alpha
Helix 32
32
D
4118 4123Right-handed 310
Helix 33
33
D
4133 4147Right-handed alpha
Helix 34
34
D
4182 4191Right-handed alpha
Helix 35
35
D
4198 4209Right-handed alpha
Helix 36
36
D
4231 4250Right-handed alpha
Helix 37
37
E
5027 5036Right-handed alpha
Helix 38
38
E
5069 5085Right-handed alpha
Helix 39
39
E
5119 5123Right-handed 310
Helix 40
40
E
5133 5146Right-handed alpha
Helix 41
41
E
5183 5190Right-handed alpha
Helix 42
42
E
5198 5208Right-handed alpha
Helix 43
43
E
5230 5252Right-handed alpha
Helix 44
44
F
6012 6017Right-handed alpha
Helix 45
45
F
6029 6038Right-handed alpha
Helix 46
46
F
6070 6084Right-handed alpha
Helix 47
47
F
6119 6123Right-handed 310
Helix 48
48
F
6133 6142Right-handed alpha
Helix 49
49
F
6144 6148Right-handed 310
Helix 50
50
F
6162 6166Right-handed 310
Helix 51
51
F
6182 6191Right-handed alpha
Helix 52
52
F
6198 6208Right-handed alpha
Helix 53
53
F
6230 6251Right-handed alpha
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There are 15 sheets in PDB entry 1SJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1045first strand
Strand 2
A
1052 1054anti-parallel
Strand 3
A
1063 1065anti-parallel
Strand 4
A
1021 1023parallel
Strand 5
A
1088 1097parallel
Strand 6
A
1194 1196anti-parallel
Strand 7
A
1156 1159parallel
Strand 8
A
1114 1116parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1045first strand
Strand 2
A
1052 1054anti-parallel
Strand 3
A
1063 1065anti-parallel
Strand 4
A
1021 1023parallel
Strand 5
A
1088 1097parallel
Strand 6
A
1212 1222parallel
Strand 7
A
1107 1110anti-parallel
Strand 8
A
1151 1154parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2022 2025first strand
Strand 2
B
2088 2097parallel
Strand 3
B
2212 2222parallel
Strand 4
B
2107 2116anti-parallel
Strand 5
B
2151 2159parallel
Strand 6
B
2194 2196parallel
Strand 7
B
2088 2097anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2042 2043first strand
Strand 2
B
2052 2057anti-parallel
Strand 3
B
2060 2065anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3021 3025first strand
Strand 2
C
3088 3097parallel
Strand 3
C
3212 3222parallel
Strand 4
C
3107 3115anti-parallel
Strand 5
C
3152 3158parallel
Strand 6
C
3194 3196parallel
Strand 7
C
3088 3097anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3045 3046first strand
Strand 2
C
3051 3052anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3055 3057first strand
Strand 2
C
3060 3062anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4021 4022first strand
Strand 2
D
4062 4063parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4045 4046first strand
Strand 2
D
4051 4052anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4088 4095first strand
Strand 2
D
4212 4219parallel
Strand 3
D
4107 4114anti-parallel
Strand 4
D
4151 4157parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5021 5023first strand
Strand 2
E
5088 5096parallel
Strand 3
E
5212 5221parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5039 5043first strand
Strand 2
E
5052 5057anti-parallel
Strand 3
E
5060 5065anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5107 5116first strand
Strand 2
E
5151 5159parallel
Strand 3
E
5195 5196parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6042 6046first strand
Strand 2
F
6051 6054anti-parallel
Strand 3
F
6063 6065anti-parallel
Strand 4
F
6021 6024parallel
Strand 5
F
6088 6097parallel
Strand 6
F
6194 6196anti-parallel
Strand 7
F
6151 6158parallel
Strand 8
F
6107 6113parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6130 6131first strand
Strand 2
F
6107 6113anti-parallel
Strand 3
F
6216 6219anti-parallel
Strand 4
F
6088 6097parallel
Strand 5
F
6212 6213parallel
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