Analysis of interatomic Contacts of Structural Units in PDB entry:
1SOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SOT entry

There are 3 chains in PDB entry 1SOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MSE 42ALA 353
B
MSE 42HIS 361
C
MSE 42THR 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1SOT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
47 55Right-handed alpha
Helix 2
2
A
95 99Right-handed alpha
Helix 3
3
A
185 189Right-handed 310
Helix 4
4
A
238 251Right-handed alpha
Helix 5
5
A
315 325Right-handed alpha
Helix 6
6
B
47 55Right-handed alpha
Helix 7
7
B
95 99Right-handed alpha
Helix 8
8
B
185 189Right-handed 310
Helix 9
9
B
238 252Right-handed alpha
Helix 10
10
B
314 324Right-handed alpha
Helix 11
11
C
47 55Right-handed alpha
Helix 12
12
C
95 99Right-handed alpha
Helix 13
13
C
185 189Right-handed 310
Helix 14
14
C
238 252Right-handed alpha
Helix 15
15
C
315 323Right-handed alpha
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There are 13 sheets in PDB entry 1SOT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 65first strand
Strand 2
A
75 84anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
113 122anti-parallel
Strand 6
A
103 107anti-parallel
Strand 7
A
58 65anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 159first strand
Strand 2
A
167 175anti-parallel
Strand 3
A
190 192anti-parallel
Strand 4
A
233 237anti-parallel
Strand 5
A
212 217anti-parallel
Strand 6
A
204 207anti-parallel
Strand 7
A
154 159anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
257 258first strand
Strand 2
A
349 350anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
282 283first strand
Strand 2
A
303 304anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 333first strand
Strand 2
A
344 347anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 65first strand
Strand 2
B
75 84anti-parallel
Strand 3
B
90 94anti-parallel
Strand 4
B
127 131anti-parallel
Strand 5
B
113 122anti-parallel
Strand 6
B
103 107anti-parallel
Strand 7
B
58 65anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 159first strand
Strand 2
B
167 175anti-parallel
Strand 3
B
190 192anti-parallel
Strand 4
B
233 237anti-parallel
Strand 5
B
212 217anti-parallel
Strand 6
B
204 207anti-parallel
Strand 7
B
154 159anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
257 258first strand
Strand 2
B
349 350anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
282 283first strand
Strand 2
B
303 307anti-parallel
Strand 3
B
330 335anti-parallel
Strand 4
B
342 347anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 63first strand
Strand 2
C
78 84anti-parallel
Strand 3
C
90 94anti-parallel
Strand 4
C
127 131anti-parallel
Strand 5
C
113 122anti-parallel
Strand 6
C
104 107anti-parallel
Strand 7
C
58 63anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 159first strand
Strand 2
C
167 175anti-parallel
Strand 3
C
190 192anti-parallel
Strand 4
C
233 237anti-parallel
Strand 5
C
212 217anti-parallel
Strand 6
C
204 207anti-parallel
Strand 7
C
154 159anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
306 307first strand
Strand 2
C
310 311anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
330 331first strand
Strand 2
C
346 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il