Analysis of interatomic Contacts of Structural Units in PDB entry:
1SOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SOV entry

There are 2 chains in PDB entry 1SOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15LEU 331
B
 GLY 15LEU 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 1SOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 44Right-handed alpha
Helix 2
2
A
57 73Right-handed alpha
Helix 3
3
A
84 89Right-handed 310
Helix 4
4
A
108 111Right-handed 310
Helix 5
5
A
112 131Right-handed alpha
Helix 6
6
A
141 154Right-handed alpha
Helix 7
7
A
156 158Right-handed 310
Helix 8
8
A
164 181Right-handed alpha
Helix 9
9
A
183 185Right-handed 310
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
203 205Right-handed 310
Helix 12
12
A
210 215Right-handed alpha
Helix 13
13
A
220 242Right-handed alpha
Helix 14
14
A
247 263Right-handed alpha
Helix 15
15
A
278 280Right-handed 310
Helix 16
16
A
308 330Right-handed alpha
Helix 17
17
B
29 44Right-handed alpha
Helix 18
18
B
57 73Right-handed alpha
Helix 19
19
B
84 89Right-handed 310
Helix 20
20
B
108 111Right-handed 310
Helix 21
21
B
112 131Right-handed alpha
Helix 22
22
B
141 154Right-handed alpha
Helix 23
23
B
156 158Right-handed 310
Helix 24
24
B
164 181Right-handed alpha
Helix 25
25
B
183 185Right-handed 310
Helix 26
26
B
195 199Right-handed 310
Helix 27
27
B
203 205Right-handed 310
Helix 28
28
B
210 215Right-handed alpha
Helix 29
29
B
220 242Right-handed alpha
Helix 30
30
B
247 263Right-handed alpha
Helix 31
31
B
278 280Right-handed 310
Helix 32
32
B
308 330Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1SOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
47 52parallel
Strand 3
A
22 26parallel
Strand 4
A
93 96parallel
Strand 5
A
134 137parallel
Strand 6
A
160 162parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
207 208anti-parallel
Strand 3
A
209 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
200 201anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
297 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
282 289anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
47 52parallel
Strand 3
B
22 26parallel
Strand 4
B
93 96parallel
Strand 5
B
134 137parallel
Strand 6
B
160 162parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
207 208anti-parallel
Strand 3
B
209 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
200 201anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
291 294anti-parallel
Strand 3
B
297 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 276first strand
Strand 2
B
282 289anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il