Analysis of interatomic Contacts of Structural Units in PDB entry:
1T0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T0B entry

There are 8 chains in PDB entry 1T0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 242
B
 THR 3ALA 242
C
 THR 3ALA 242
D
 THR 3ALA 242
E
 THR 3ALA 242
F
 THR 3LYS 243
G
 THR 3GLN 244
H
 THR 3LYS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 1T0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
29 41Right-handed alpha
Helix 4
4
A
52 57Right-handed 310
Helix 5
5
A
58 64Right-handed alpha
Helix 6
6
A
75 79Right-handed 310
Helix 7
7
A
80 93Right-handed alpha
Helix 8
8
A
102 105Right-handed 310
Helix 9
9
A
106 114Right-handed alpha
Helix 10
10
A
137 141Right-handed 310
Helix 11
11
A
203 206Right-handed 310
Helix 12
12
A
207 222Right-handed alpha
Helix 13
13
B
14 19Right-handed alpha
Helix 14
14
B
19 26Right-handed alpha
Helix 15
15
B
29 41Right-handed alpha
Helix 16
16
B
52 57Right-handed 310
Helix 17
17
B
58 64Right-handed alpha
Helix 18
18
B
75 79Right-handed 310
Helix 19
19
B
80 93Right-handed alpha
Helix 20
20
B
102 105Right-handed 310
Helix 21
21
B
106 114Right-handed alpha
Helix 22
22
B
137 141Right-handed 310
Helix 23
23
B
203 206Right-handed 310
Helix 24
24
B
207 221Right-handed alpha
Helix 25
25
C
14 19Right-handed alpha
Helix 26
26
C
19 26Right-handed alpha
Helix 27
27
C
29 41Right-handed alpha
Helix 28
28
C
52 57Right-handed 310
Helix 29
29
C
58 64Right-handed alpha
Helix 30
30
C
75 79Right-handed 310
Helix 31
31
C
80 93Right-handed alpha
Helix 32
32
C
102 105Right-handed 310
Helix 33
33
C
106 114Right-handed alpha
Helix 34
34
C
137 141Right-handed 310
Helix 35
35
C
203 206Right-handed 310
Helix 36
36
C
207 221Right-handed alpha
Helix 37
37
D
14 19Right-handed alpha
Helix 38
38
D
19 24Right-handed alpha
Helix 39
39
D
29 41Right-handed alpha
Helix 40
40
D
52 57Right-handed 310
Helix 41
41
D
58 64Right-handed alpha
Helix 42
42
D
75 79Right-handed 310
Helix 43
43
D
80 93Right-handed alpha
Helix 44
44
D
102 105Right-handed 310
Helix 45
45
D
106 114Right-handed alpha
Helix 46
46
D
137 141Right-handed 310
Helix 47
47
D
203 206Right-handed 310
Helix 48
48
D
207 221Right-handed alpha
Helix 49
49
E
14 19Right-handed alpha
Helix 50
50
E
19 26Right-handed alpha
Helix 51
51
E
29 41Right-handed alpha
Helix 52
52
E
52 57Right-handed 310
Helix 53
53
E
58 64Right-handed alpha
Helix 54
54
E
75 79Right-handed 310
Helix 55
55
E
80 93Right-handed alpha
Helix 56
56
E
102 105Right-handed 310
Helix 57
57
E
106 114Right-handed alpha
Helix 58
58
E
137 141Right-handed 310
Helix 59
59
E
203 206Right-handed 310
Helix 60
60
E
207 222Right-handed alpha
Helix 61
61
F
14 19Right-handed alpha
Helix 62
62
F
19 26Right-handed alpha
Helix 63
63
F
29 41Right-handed alpha
Helix 64
64
F
52 57Right-handed 310
Helix 65
65
F
58 64Right-handed alpha
Helix 66
66
F
75 79Right-handed 310
Helix 67
67
F
80 93Right-handed alpha
Helix 68
68
F
102 105Right-handed 310
Helix 69
69
F
106 114Right-handed alpha
Helix 70
70
F
137 141Right-handed 310
Helix 71
71
F
203 206Right-handed 310
Helix 72
72
F
207 222Right-handed alpha
Helix 73
73
G
14 19Right-handed alpha
Helix 74
74
G
19 26Right-handed alpha
Helix 75
75
G
29 41Right-handed alpha
Helix 76
76
G
52 57Right-handed 310
Helix 77
77
G
58 64Right-handed alpha
Helix 78
78
G
75 79Right-handed 310
Helix 79
79
G
80 94Right-handed alpha
Helix 80
80
G
102 105Right-handed 310
Helix 81
81
G
106 114Right-handed alpha
Helix 82
82
G
137 141Right-handed 310
Helix 83
83
G
203 206Right-handed 310
Helix 84
84
G
207 222Right-handed alpha
Helix 85
85
H
14 19Right-handed alpha
Helix 86
86
H
19 26Right-handed alpha
Helix 87
87
H
29 41Right-handed alpha
Helix 88
88
H
52 57Right-handed 310
Helix 89
89
H
58 64Right-handed alpha
Helix 90
90
H
75 79Right-handed 310
Helix 91
91
H
80 93Right-handed alpha
Helix 92
92
H
102 105Right-handed 310
Helix 93
93
H
106 114Right-handed alpha
Helix 94
94
H
137 141Right-handed 310
Helix 95
95
H
203 206Right-handed 310
Helix 96
96
H
207 221Right-handed alpha
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There are 16 sheets in PDB entry 1T0B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
6 11parallel
Strand 3
A
67 71parallel
Strand 4
A
96 100parallel
Strand 5
A
190 195parallel
Strand 6
A
178 187anti-parallel
Strand 7
A
166 173anti-parallel
Strand 8
A
120 132anti-parallel
Strand 9
A
146 156anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
6 11parallel
Strand 3
A
67 71parallel
Strand 4
A
96 100parallel
Strand 5
A
190 195parallel
Strand 6
A
178 187anti-parallel
Strand 7
A
166 173anti-parallel
Strand 8
A
120 132anti-parallel
Strand 9
D
232 233parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
D
120 132parallel
Strand 3
D
166 173anti-parallel
Strand 4
D
178 187anti-parallel
Strand 5
D
190 195anti-parallel
Strand 6
D
96 100parallel
Strand 7
D
67 71parallel
Strand 8
D
6 11parallel
Strand 9
D
44 49parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
D
120 132parallel
Strand 3
D
146 156anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
6 11parallel
Strand 3
B
67 71parallel
Strand 4
B
96 100parallel
Strand 5
B
190 195parallel
Strand 6
B
178 187anti-parallel
Strand 7
B
166 173anti-parallel
Strand 8
B
120 132anti-parallel
Strand 9
B
146 156anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
6 11parallel
Strand 3
B
67 71parallel
Strand 4
B
96 100parallel
Strand 5
B
190 195parallel
Strand 6
B
178 187anti-parallel
Strand 7
B
166 173anti-parallel
Strand 8
B
120 132anti-parallel
Strand 9
C
232 233parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
C
120 132parallel
Strand 3
C
166 173anti-parallel
Strand 4
C
178 187anti-parallel
Strand 5
C
190 195anti-parallel
Strand 6
C
96 100parallel
Strand 7
C
67 71parallel
Strand 8
C
6 11parallel
Strand 9
C
44 49parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
C
120 132parallel
Strand 3
C
146 156anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 49first strand
Strand 2
E
6 11parallel
Strand 3
E
67 71parallel
Strand 4
E
96 100parallel
Strand 5
E
190 195parallel
Strand 6
E
178 187anti-parallel
Strand 7
E
166 173anti-parallel
Strand 8
E
120 132anti-parallel
Strand 9
E
146 156anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 49first strand
Strand 2
E
6 11parallel
Strand 3
E
67 71parallel
Strand 4
E
96 100parallel
Strand 5
E
190 195parallel
Strand 6
E
178 187anti-parallel
Strand 7
E
166 173anti-parallel
Strand 8
E
120 132anti-parallel
Strand 9
H
232 233parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
232 233first strand
Strand 2
H
120 132parallel
Strand 3
H
166 173anti-parallel
Strand 4
H
178 187anti-parallel
Strand 5
H
190 195anti-parallel
Strand 6
H
96 100parallel
Strand 7
H
67 71parallel
Strand 8
H
6 11parallel
Strand 9
H
44 49parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
232 233first strand
Strand 2
H
120 132parallel
Strand 3
H
146 156anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 49first strand
Strand 2
F
6 11parallel
Strand 3
F
67 71parallel
Strand 4
F
96 100parallel
Strand 5
F
190 195parallel
Strand 6
F
178 187anti-parallel
Strand 7
F
166 173anti-parallel
Strand 8
F
120 132anti-parallel
Strand 9
F
146 156anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 49first strand
Strand 2
F
6 11parallel
Strand 3
F
67 71parallel
Strand 4
F
96 100parallel
Strand 5
F
190 195parallel
Strand 6
F
178 187anti-parallel
Strand 7
F
166 173anti-parallel
Strand 8
F
120 132anti-parallel
Strand 9
G
232 233parallel
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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
232 233first strand
Strand 2
G
120 132parallel
Strand 3
G
166 173anti-parallel
Strand 4
G
178 187anti-parallel
Strand 5
G
190 195anti-parallel
Strand 6
G
96 100parallel
Strand 7
G
67 71parallel
Strand 8
G
6 11parallel
Strand 9
G
44 49parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
232 233first strand
Strand 2
G
120 132parallel
Strand 3
G
146 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il