Analysis of interatomic Contacts of Structural Units in PDB entry:
1T3A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T3A entry

There are 2 chains in PDB entry 1T3A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1CYS 411
B
 PRO 1ARG 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1T3A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 55Right-handed 310
Helix 2
2
A
75 94Right-handed alpha
Helix 3
3
A
96 108Right-handed alpha
Helix 4
4
A
166 170Right-handed 310
Helix 5
5
A
171 175Right-handed 310
Helix 6
6
A
204 221Right-handed alpha
Helix 7
7
A
248 255Right-handed alpha
Helix 8
8
A
256 262Right-handed 310
Helix 9
9
A
263 287Right-handed alpha
Helix 10
10
A
292 294Right-handed 310
Helix 11
11
A
295 306Right-handed alpha
Helix 12
12
A
319 332Right-handed alpha
Helix 13
13
A
334 343Right-handed alpha
Helix 14
14
A
376 387Right-handed 310
Helix 15
15
A
391 393Right-handed 310
Helix 16
16
A
402 407Right-handed alpha
Helix 17
17
B
50 55Right-handed 310
Helix 18
18
B
75 96Right-handed alpha
Helix 19
19
B
96 108Right-handed alpha
Helix 20
20
B
166 170Right-handed 310
Helix 21
21
B
171 175Right-handed 310
Helix 22
22
B
204 221Right-handed alpha
Helix 23
23
B
248 255Right-handed alpha
Helix 24
24
B
256 262Right-handed 310
Helix 25
25
B
263 288Right-handed alpha
Helix 26
26
B
292 295Right-handed 310
Helix 27
27
B
296 306Right-handed alpha
Helix 28
28
B
319 331Right-handed alpha
Helix 29
29
B
334 343Right-handed alpha
Helix 30
30
B
376 387Right-handed 310
Helix 31
31
B
391 395Right-handed 310
Helix 32
32
B
400 407Right-handed alpha
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There are 8 sheets in PDB entry 1T3A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
29 35anti-parallel
Strand 5
A
38 44anti-parallel
Strand 6
A
147 151parallel
Strand 7
A
181 184parallel
Strand 8
A
160 163anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
356 359anti-parallel
Strand 4
A
395 396anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
246 247anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
316 318anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
131 134anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
29 35anti-parallel
Strand 5
B
38 44anti-parallel
Strand 6
B
147 151parallel
Strand 7
B
181 184parallel
Strand 8
B
160 163anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
355 358anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
246 247anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
316 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il