Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1T5R entry

There are 8 chains in PDB entry 1T5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ASN 284
B	ASN 3	ASN 284
C	ILE 4	ASN 284
D	ASN 3	ASN 284
E	ASN 3	ASN 284
F	ASN 3	ASN 284
G	ASN 3	ASN 284
H	ASN 3	ASN 284

There are 24 helices in PDB entry 1T5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	187	192	Right-handed 310
Helix 2	2	A	194	198	Right-handed 310
Helix 3	3	A	199	204	Right-handed alpha
Helix 4	4	B	187	192	Right-handed 310
Helix 5	5	B	194	198	Right-handed 310
Helix 6	6	B	199	204	Right-handed alpha
Helix 7	7	C	187	192	Right-handed 310
Helix 8	8	C	194	198	Right-handed 310
Helix 9	9	C	199	204	Right-handed alpha
Helix 10	10	D	187	192	Right-handed 310
Helix 11	11	D	194	198	Right-handed 310
Helix 12	12	D	199	204	Right-handed alpha
Helix 13	13	E	187	192	Right-handed 310
Helix 14	14	E	194	198	Right-handed 310
Helix 15	15	E	199	204	Right-handed alpha
Helix 16	16	F	187	192	Right-handed 310
Helix 17	17	F	194	198	Right-handed 310
Helix 18	18	F	199	204	Right-handed alpha
Helix 19	19	G	187	192	Right-handed 310
Helix 20	20	G	194	198	Right-handed 310
Helix 21	21	G	199	204	Right-handed alpha
Helix 22	22	H	187	192	Right-handed 310
Helix 23	23	H	194	198	Right-handed 310
Helix 24	24	H	199	204	Right-handed alpha

There are 46 sheets in PDB entry 1T5R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	12	22	anti-parallel
Strand 3	A	27	37	anti-parallel
Strand 4	A	43	55	anti-parallel
Strand 5	A	209	217	anti-parallel
Strand 6	A	89	95	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	12	22	anti-parallel
Strand 3	A	27	37	anti-parallel
Strand 4	A	43	55	anti-parallel
Strand 5	A	205	206	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	69	84	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	142	149	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	69	84	anti-parallel
Strand 3	A	223	242	anti-parallel
Strand 4	A	250	272	anti-parallel
Strand 5	A	278	283	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	104	112	anti-parallel
Strand 3	A	131	138	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	170	171	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	11	22	anti-parallel
Strand 3	B	27	38	anti-parallel
Strand 4	B	44	55	anti-parallel
Strand 5	B	210	216	anti-parallel
Strand 6	B	89	95	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	11	22	anti-parallel
Strand 3	B	27	38	anti-parallel
Strand 4	B	44	55	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	69	84	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	142	150	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	69	84	anti-parallel
Strand 3	B	223	243	anti-parallel
Strand 4	B	249	272	anti-parallel
Strand 5	B	278	283	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	112	anti-parallel
Strand 3	B	131	138	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	170	171	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	11	22	anti-parallel
Strand 3	C	27	38	anti-parallel
Strand 4	C	44	55	anti-parallel
Strand 5	C	209	216	anti-parallel
Strand 6	C	89	95	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	11	22	anti-parallel
Strand 3	C	27	38	anti-parallel
Strand 4	C	44	55	anti-parallel
Strand 5	C	205	206	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	69	84	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	142	150	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	62	first strand
Strand 2	C	69	84	anti-parallel
Strand 3	C	223	243	anti-parallel
Strand 4	C	249	272	anti-parallel
Strand 5	C	278	283	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	104	112	anti-parallel
Strand 3	C	131	138	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	170	171	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	12	22	anti-parallel
Strand 3	D	27	37	anti-parallel
Strand 4	D	43	55	anti-parallel
Strand 5	D	209	217	anti-parallel
Strand 6	D	89	95	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	12	22	anti-parallel
Strand 3	D	27	37	anti-parallel
Strand 4	D	43	55	anti-parallel
Strand 5	D	205	206	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	69	84	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	142	150	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	69	84	anti-parallel
Strand 3	D	223	242	anti-parallel
Strand 4	D	250	272	anti-parallel
Strand 5	D	278	283	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	112	anti-parallel
Strand 3	D	131	138	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	170	171	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	11	22	anti-parallel
Strand 3	E	27	38	anti-parallel
Strand 4	E	43	55	anti-parallel
Strand 5	E	209	217	anti-parallel
Strand 6	E	89	95	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	11	22	anti-parallel
Strand 3	E	27	38	anti-parallel
Strand 4	E	43	55	anti-parallel
Strand 5	E	205	206	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	69	84	anti-parallel
Strand 3	E	153	160	anti-parallel
Strand 4	E	142	150	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	69	84	anti-parallel
Strand 3	E	223	245	anti-parallel
Strand 4	E	248	272	anti-parallel
Strand 5	E	278	283	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	104	112	anti-parallel
Strand 3	E	131	138	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	11	22	anti-parallel
Strand 3	F	27	38	anti-parallel
Strand 4	F	43	55	anti-parallel
Strand 5	F	209	217	anti-parallel
Strand 6	F	89	95	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	11	22	anti-parallel
Strand 3	F	27	38	anti-parallel
Strand 4	F	43	55	anti-parallel
Strand 5	F	205	206	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	69	84	anti-parallel
Strand 3	F	153	160	anti-parallel
Strand 4	F	142	150	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	69	84	anti-parallel
Strand 3	F	223	243	anti-parallel
Strand 4	F	249	272	anti-parallel
Strand 5	F	278	283	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	104	112	anti-parallel
Strand 3	F	131	138	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	170	171	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	11	22	anti-parallel
Strand 3	G	27	38	anti-parallel
Strand 4	G	43	55	anti-parallel
Strand 5	G	209	217	anti-parallel
Strand 6	G	89	95	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	11	22	anti-parallel
Strand 3	G	27	38	anti-parallel
Strand 4	G	43	55	anti-parallel
Strand 5	G	205	206	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	69	84	anti-parallel
Strand 3	G	153	160	anti-parallel
Strand 4	G	142	150	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	69	84	anti-parallel
Strand 3	G	223	245	anti-parallel
Strand 4	G	248	272	anti-parallel
Strand 5	G	278	283	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	104	112	anti-parallel
Strand 3	G	131	138	anti-parallel

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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	11	22	anti-parallel
Strand 3	H	27	38	anti-parallel
Strand 4	H	44	55	anti-parallel
Strand 5	H	209	216	anti-parallel
Strand 6	H	89	95	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	11	22	anti-parallel
Strand 3	H	27	38	anti-parallel
Strand 4	H	44	55	anti-parallel
Strand 5	H	205	206	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	69	84	anti-parallel
Strand 3	H	153	160	anti-parallel
Strand 4	H	142	150	anti-parallel

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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	69	84	anti-parallel
Strand 3	H	223	243	anti-parallel
Strand 4	H	249	272	anti-parallel
Strand 5	H	278	283	anti-parallel

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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	104	112	anti-parallel
Strand 3	H	131	138	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	163	first strand
Strand 2	H	170	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1T5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
1T5R