Analysis of interatomic Contacts of Structural Units in PDB entry:
1T8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1T8U entry

There are 2 chains in PDB entry 1T8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 136GLY 406
B
PRO 136GLY 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1T8U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
137 147Right-handed alpha
Helix 2
2
A
164 173Right-handed alpha
Helix 3
3
A
191 194Right-handed 310
Helix 4
4
A
195 203Right-handed alpha
Helix 5
5
A
218 222Right-handed 310
Helix 6
6
A
224 233Right-handed alpha
Helix 7
7
A
244 260Right-handed alpha
Helix 8
8
A
265 271Right-handed alpha
Helix 9
9
A
283 288Right-handed alpha
Helix 10
10
A
290 299Right-handed alpha
Helix 11
11
A
303 305Right-handed 310
Helix 12
12
A
312 318Right-handed alpha
Helix 13
13
A
318 330Right-handed alpha
Helix 14
14
A
337 339Right-handed 310
Helix 15
15
A
376 399Right-handed alpha
Helix 16
16
B
137 148Right-handed alpha
Helix 17
17
B
164 173Right-handed alpha
Helix 18
18
B
191 193Right-handed 310
Helix 19
19
B
194 203Right-handed alpha
Helix 20
20
B
217 222Right-handed 310
Helix 21
21
B
224 233Right-handed alpha
Helix 22
22
B
244 260Right-handed alpha
Helix 23
23
B
265 270Right-handed alpha
Helix 24
24
B
283 288Right-handed alpha
Helix 25
25
B
290 299Right-handed alpha
Helix 26
26
B
303 305Right-handed 310
Helix 27
27
B
312 318Right-handed alpha
Helix 28
28
B
318 330Right-handed alpha
Helix 29
29
B
337 339Right-handed 310
Helix 30
30
B
376 399Right-handed alpha
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There are 6 sheets in PDB entry 1T8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 150first strand
Strand 2
A
205 206anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 180first strand
Strand 2
A
211 215parallel
Strand 3
A
155 159parallel
Strand 4
A
237 242parallel
Strand 5
A
307 311parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
341 344first strand
Strand 2
A
349 352anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 180first strand
Strand 2
B
211 215parallel
Strand 3
B
155 159parallel
Strand 4
B
237 242parallel
Strand 5
B
307 311parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
271 273first strand
Strand 2
B
278 279anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
341 344first strand
Strand 2
B
349 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il