Analysis of interatomic Contacts of Structural Units in PDB entry:
1TLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TLY entry

There are 2 chains in PDB entry 1TLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9HIS 275
B
 LEU 9PHE 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 1TLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 91Right-handed alpha
Helix 2
2
A
238 242Right-handed 310
Helix 3
3
B
86 91Right-handed alpha
Helix 4
4
B
238 242Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1TLY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 23first strand
Strand 2
A
35 45anti-parallel
Strand 3
A
48 57anti-parallel
Strand 4
A
77 85anti-parallel
Strand 5
A
99 111anti-parallel
Strand 6
A
120 131anti-parallel
Strand 7
A
138 151anti-parallel
Strand 8
A
159 176anti-parallel
Strand 9
A
179 191anti-parallel
Strand 10
A
213 223anti-parallel
Strand 11
A
227 237anti-parallel
Strand 12
A
261 272anti-parallel
Strand 13
A
13 23anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
254 256anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 23first strand
Strand 2
B
35 45anti-parallel
Strand 3
B
48 57anti-parallel
Strand 4
B
77 85anti-parallel
Strand 5
B
99 115anti-parallel
Strand 6
B
118 131anti-parallel
Strand 7
B
138 151anti-parallel
Strand 8
B
159 176anti-parallel
Strand 9
B
179 191anti-parallel
Strand 10
B
213 223anti-parallel
Strand 11
B
227 237anti-parallel
Strand 12
B
261 271anti-parallel
Strand 13
B
14 23anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
255 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il