Analysis of interatomic Contacts of Structural Units in PDB entry:
1TVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TVK entry

There are 2 chains in PDB entry 1TVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 2SER 439
B
ARG 2ASP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1TVK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 27Right-handed alpha
Helix 2
2
A
71 77Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
102 107Right-handed alpha
Helix 5
5
A
111 128Right-handed alpha
Helix 6
6
A
147 159Right-handed alpha
Helix 7
7
A
183 196Right-handed alpha
Helix 8
8
A
206 211Right-handed alpha
Helix 9
9
A
223 228Right-handed alpha
Helix 10
10
A
231 239Right-handed alpha
Helix 11
11
A
251 260Right-handed alpha
Helix 12
12
A
287 296Right-handed alpha
Helix 13
13
A
327 336Right-handed alpha
Helix 14
14
A
384 400Right-handed alpha
Helix 15
15
A
405 410Right-handed alpha
Helix 16
16
A
414 433Right-handed alpha
Helix 17
17
B
9 21Right-handed alpha
Helix 18
18
B
25 29Right-handed 310
Helix 19
19
B
46 50Right-handed 310
Helix 20
20
B
72 78Right-handed alpha
Helix 21
21
B
100 105Right-handed alpha
Helix 22
22
B
115 125Right-handed alpha
Helix 23
23
B
145 156Right-handed alpha
Helix 24
24
B
180 193Right-handed alpha
Helix 25
25
B
205 213Right-handed alpha
Helix 26
26
B
221 237Right-handed alpha
Helix 27
27
B
238 241Right-handed 310
Helix 28
28
B
249 258Right-handed alpha
Helix 29
29
B
288 294Right-handed alpha
Helix 30
30
B
304 308Right-handed 310
Helix 31
31
B
322 336Right-handed alpha
Helix 32
32
B
337 341Right-handed 310
Helix 33
33
B
376 390Right-handed alpha
Helix 34
34
B
394 400Right-handed alpha
Helix 35
35
B
406 424Right-handed alpha
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There are 8 sheets in PDB entry 1TVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 68first strand
Strand 2
A
3 9parallel
Strand 3
A
132 138parallel
Strand 4
A
165 168parallel
Strand 5
A
200 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
171 172first strand
Strand 2
A
204 205parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
312 314first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
318 320first strand
Strand 2
A
354 356parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 6first strand
Strand 2
B
130 134parallel
Strand 3
B
163 164parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
136 138first strand
Strand 2
B
167 170parallel
Strand 3
B
202 203parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
199 200first strand
Strand 2
B
265 266parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
268 269first strand
Strand 2
B
364 368anti-parallel
Strand 3
B
316 318anti-parallel
Strand 4
B
352 354parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il