Analysis of interatomic Contacts of Structural Units in PDB entry:
1TX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TX6 entry

There are 6 chains in PDB entry 1TX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 16ASN 245
B
ILE 16ASN 245
C
ILE 16ASN 245
D
ILE 16ASN 245
I
ARG 5ARG 125
J
ARG 5ARG 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1TX6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
164 172Right-handed alpha
Helix 3
3
A
234 244Right-handed alpha
Helix 4
4
B
55 59Right-handed 310
Helix 5
5
B
164 172Right-handed alpha
Helix 6
6
B
234 244Right-handed alpha
Helix 7
7
C
55 59Right-handed 310
Helix 8
8
C
164 172Right-handed alpha
Helix 9
9
C
234 244Right-handed alpha
Helix 10
10
D
55 59Right-handed 310
Helix 11
11
D
164 172Right-handed alpha
Helix 12
12
D
234 245Right-handed alpha
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There are 15 sheets in PDB entry 1TX6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
204 216anti-parallel
Strand 6
A
226 230anti-parallel
Strand 7
A
180 183anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
204 216anti-parallel
Strand 6
I
13 16anti-parallel
Strand 7
I
22 25anti-parallel
Strand 8
I
54 56anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
64 67anti-parallel
Strand 7
A
30 34anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 201anti-parallel
Strand 5
B
204 217anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 201anti-parallel
Strand 5
B
204 217anti-parallel
Strand 6
I
72 75anti-parallel
Strand 7
I
81 84anti-parallel
Strand 8
I
114 115anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 34first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
64 67anti-parallel
Strand 7
B
30 34anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
20 21first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
135 140anti-parallel
Strand 4
C
198 201anti-parallel
Strand 5
C
204 216anti-parallel
Strand 6
C
226 230anti-parallel
Strand 7
C
180 183anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
20 21first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
135 140anti-parallel
Strand 4
C
198 201anti-parallel
Strand 5
C
204 216anti-parallel
Strand 6
J
13 16anti-parallel
Strand 7
J
22 25anti-parallel
Strand 8
J
54 56anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 34first strand
Strand 2
C
40 48anti-parallel
Strand 3
C
51 54anti-parallel
Strand 4
C
104 108anti-parallel
Strand 5
C
81 90anti-parallel
Strand 6
C
64 67anti-parallel
Strand 7
C
30 34anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 201anti-parallel
Strand 5
D
204 217anti-parallel
Strand 6
D
226 230anti-parallel
Strand 7
D
180 183anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 201anti-parallel
Strand 5
D
204 217anti-parallel
Strand 6
J
72 75anti-parallel
Strand 7
J
81 84anti-parallel
Strand 8
J
114 115anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 34first strand
Strand 2
D
40 48anti-parallel
Strand 3
D
51 54anti-parallel
Strand 4
D
104 108anti-parallel
Strand 5
D
81 90anti-parallel
Strand 6
D
64 67anti-parallel
Strand 7
D
30 34anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
39 41first strand
Strand 2
I
49 51anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
39 40first strand
Strand 2
J
50 51anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
98 99first strand
Strand 2
J
109 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il