Analysis of interatomic Contacts of Structural Units in PDB entry:
1TYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TYE entry

There are 6 chains in PDB entry 1TYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 1PRO 452
B
GLY 1GLN 440
C
LEU 1PRO 452
D
GLY 1GLN 440
E
LEU 1PRO 452
F
GLY 1GLN 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1TYE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
151 159Right-handed alpha
Helix 2
2
A
187 192Right-handed alpha
Helix 3
3
A
200 207Right-handed alpha
Helix 4
4
A
227 231Right-handed 310
Helix 5
5
A
259 264Right-handed alpha
Helix 6
6
A
440 442Right-handed 310
Helix 7
7
B
12 18Right-handed alpha
Helix 8
8
B
40 47Right-handed alpha
Helix 9
9
B
121 126Right-handed 310
Helix 10
10
B
127 146Right-handed alpha
Helix 11
11
B
169 174Right-handed 310
Helix 12
12
B
175 181Right-handed 310
Helix 13
13
B
199 208Right-handed alpha
Helix 14
14
B
221 232Right-handed alpha
Helix 15
15
B
232 237Right-handed alpha
Helix 16
16
B
258 264Right-handed 310
Helix 17
17
B
281 286Right-handed 310
Helix 18
18
B
291 302Right-handed alpha
Helix 19
19
B
314 324Right-handed alpha
Helix 20
20
B
337 350Right-handed alpha
Helix 21
21
C
151 159Right-handed alpha
Helix 22
22
C
187 192Right-handed alpha
Helix 23
23
C
200 207Right-handed alpha
Helix 24
24
C
259 264Right-handed alpha
Helix 25
25
D
12 20Right-handed alpha
Helix 26
26
D
41 47Right-handed alpha
Helix 27
27
D
50 52Right-handed 310
Helix 28
28
D
121 125Right-handed 310
Helix 29
29
D
127 144Right-handed alpha
Helix 30
30
D
169 174Right-handed 310
Helix 31
31
D
177 181Right-handed 310
Helix 32
32
D
199 209Right-handed alpha
Helix 33
33
D
221 232Right-handed alpha
Helix 34
34
D
232 237Right-handed alpha
Helix 35
35
D
259 264Right-handed 310
Helix 36
36
D
281 286Right-handed 310
Helix 37
37
D
291 302Right-handed alpha
Helix 38
38
D
314 323Right-handed alpha
Helix 39
39
D
337 349Right-handed alpha
Helix 40
40
E
44 48Right-handed 310
Helix 41
41
E
151 159Right-handed alpha
Helix 42
42
E
187 192Right-handed alpha
Helix 43
43
E
200 207Right-handed alpha
Helix 44
44
E
227 231Right-handed 310
Helix 45
45
E
259 264Right-handed alpha
Helix 46
46
F
3 8Right-handed alpha
Helix 47
47
F
12 17Right-handed alpha
Helix 48
48
F
121 126Right-handed 310
Helix 49
49
F
127 144Right-handed alpha
Helix 50
50
F
169 174Right-handed 310
Helix 51
51
F
177 181Right-handed 310
Helix 52
52
F
199 208Right-handed alpha
Helix 53
53
F
221 232Right-handed alpha
Helix 54
54
F
232 237Right-handed alpha
Helix 55
55
F
258 264Right-handed 310
Helix 56
56
F
291 302Right-handed alpha
Helix 57
57
F
314 325Right-handed alpha
Helix 58
58
F
337 349Right-handed alpha
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There are 41 sheets in PDB entry 1TYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 63first strand
Strand 2
A
9 12parallel
Strand 3
A
444 448anti-parallel
Strand 4
A
434 439anti-parallel
Strand 5
A
420 425anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
52 57anti-parallel
Strand 4
A
67 68anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 79first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
120 121anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 79first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
125 126anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 100first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
129 134anti-parallel
Strand 4
A
139 143anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 175first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
220 221anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
239 242first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
266 270anti-parallel
Strand 4
A
276 281anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
293 296first strand
Strand 2
A
305 309anti-parallel
Strand 3
A
327 331anti-parallel
Strand 4
A
345 348anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 317first strand
Strand 2
A
321 324anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
360 362first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
388 392anti-parallel
Strand 4
A
405 408anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 65first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
425 431parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
353 360anti-parallel
Strand 6
B
385 389anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 105first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
366 373anti-parallel
Strand 4
B
379 381anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 197first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
112 119parallel
Strand 4
B
243 250parallel
Strand 5
B
304 310parallel
Strand 6
B
329 332parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 12first strand
Strand 2
C
444 448anti-parallel
Strand 3
C
434 439anti-parallel
Strand 4
C
420 425anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
23 27first strand
Strand 2
C
33 38anti-parallel
Strand 3
C
53 57anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
76 79first strand
Strand 2
C
82 87anti-parallel
Strand 3
C
112 117anti-parallel
Strand 4
C
120 121anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 100first strand
Strand 2
C
103 108anti-parallel
Strand 3
C
129 133anti-parallel
Strand 4
C
140 143anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 175first strand
Strand 2
C
180 185anti-parallel
Strand 3
C
194 199anti-parallel
Strand 4
C
220 221anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
239 242first strand
Strand 2
C
252 257anti-parallel
Strand 3
C
266 271anti-parallel
Strand 4
C
276 281anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
293 296first strand
Strand 2
C
305 310anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
345 348anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
314 317first strand
Strand 2
C
321 324anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
360 362first strand
Strand 2
C
374 378anti-parallel
Strand 3
C
388 392anti-parallel
Strand 4
C
406 408anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
394 395first strand
Strand 2
C
398 399anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
38 40first strand
Strand 2
D
23 26anti-parallel
Strand 3
D
54 55anti-parallel
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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
62 65first strand
Strand 2
D
87 92anti-parallel
Strand 3
D
425 431parallel
Strand 4
D
411 418anti-parallel
Strand 5
D
353 360anti-parallel
Strand 6
D
385 389anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
97 105first strand
Strand 2
D
394 403anti-parallel
Strand 3
D
366 373anti-parallel
Strand 4
D
379 381anti-parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
190 197first strand
Strand 2
D
149 156anti-parallel
Strand 3
D
112 119parallel
Strand 4
D
243 250parallel
Strand 5
D
304 311parallel
Strand 6
D
329 333parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
63 64first strand
Strand 2
E
9 12parallel
Strand 3
E
444 448anti-parallel
Strand 4
E
434 439anti-parallel
Strand 5
E
420 425anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
23 27first strand
Strand 2
E
33 38anti-parallel
Strand 3
E
53 57anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
75 79first strand
Strand 2
E
82 87anti-parallel
Strand 3
E
112 117anti-parallel
Strand 4
E
120 121anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
75 79first strand
Strand 2
E
82 87anti-parallel
Strand 3
E
112 117anti-parallel
Strand 4
E
125 126anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
97 100first strand
Strand 2
E
103 108anti-parallel
Strand 3
E
129 133anti-parallel
Strand 4
E
140 143anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
173 175first strand
Strand 2
E
180 185anti-parallel
Strand 3
E
194 199anti-parallel
Strand 4
E
220 221anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
239 242first strand
Strand 2
E
252 257anti-parallel
Strand 3
E
266 270anti-parallel
Strand 4
E
276 281anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
293 296first strand
Strand 2
E
305 310anti-parallel
Strand 3
E
327 331anti-parallel
Strand 4
E
345 348anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
314 317first strand
Strand 2
E
321 324anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
360 362first strand
Strand 2
E
374 378anti-parallel
Strand 3
E
388 392anti-parallel
Strand 4
E
405 408anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
394 395first strand
Strand 2
E
398 399anti-parallel
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There are 6 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
62 65first strand
Strand 2
F
87 92anti-parallel
Strand 3
F
426 431parallel
Strand 4
F
411 419anti-parallel
Strand 5
F
353 360anti-parallel
Strand 6
F
385 389anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
97 105first strand
Strand 2
F
394 403anti-parallel
Strand 3
F
366 373anti-parallel
Strand 4
F
379 381anti-parallel
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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
190 197first strand
Strand 2
F
149 156anti-parallel
Strand 3
F
112 119parallel
Strand 4
F
243 250parallel
Strand 5
F
305 311parallel
Strand 6
F
329 333parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il