Analysis of interatomic Contacts of Structural Units in PDB entry:
1TYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1TYG entry

There are 4 chains in PDB entry 1TYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
MET 1GLY 65
A
MET 103TYR 344
C
MET 103GLY 345
G
MET 1GLY 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1TYG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
17 25Right-handed alpha
Helix 2
2
B
42 46Right-handed 310
Helix 3
3
A
124 136Right-handed alpha
Helix 4
4
A
156 161Right-handed alpha
Helix 5
5
A
162 166Right-handed 310
Helix 6
6
A
177 191Right-handed alpha
Helix 7
7
A
211 225Right-handed alpha
Helix 8
8
A
236 245Right-handed alpha
Helix 9
9
A
266 277Right-handed alpha
Helix 10
10
A
289 299Right-handed alpha
Helix 11
11
A
307 312Right-handed alpha
Helix 12
12
A
315 336Right-handed alpha
Helix 13
13
C
124 136Right-handed alpha
Helix 14
14
C
156 161Right-handed 310
Helix 15
15
C
177 192Right-handed alpha
Helix 16
16
C
211 225Right-handed alpha
Helix 17
17
C
236 245Right-handed alpha
Helix 18
18
C
268 277Right-handed alpha
Helix 19
19
C
289 299Right-handed alpha
Helix 20
20
C
307 312Right-handed alpha
Helix 21
21
C
315 336Right-handed alpha
Helix 22
22
G
17 24Right-handed alpha
Helix 23
23
G
42 46Right-handed 310
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There are 10 sheets in PDB entry 1TYG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 9first strand
Strand 2
B
2 4anti-parallel
Strand 3
B
56 62parallel
Strand 4
B
33 36anti-parallel
Strand 5
B
39 41anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 9first strand
Strand 2
B
2 4anti-parallel
Strand 3
B
56 62parallel
Strand 4
A
144 146anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 106first strand
Strand 2
A
109 110anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 170first strand
Strand 2
A
140 142parallel
Strand 3
A
115 118parallel
Strand 4
A
303 306parallel
Strand 5
A
282 284parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 199first strand
Strand 2
A
228 233parallel
Strand 3
A
252 253parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
104 106first strand
Strand 2
C
109 111anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 170first strand
Strand 2
C
140 142parallel
Strand 3
C
115 118parallel
Strand 4
C
303 306parallel
Strand 5
C
282 283parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
197 199first strand
Strand 2
C
229 233parallel
Strand 3
C
252 253parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
7 9first strand
Strand 2
G
2 4anti-parallel
Strand 3
G
56 57parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
34 35first strand
Strand 2
G
40 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il