Analysis of interatomic Contacts of Structural Units in PDB entry:
1U7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U7U entry

There is 1 chain in PDB entry 1U7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 182ARG 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 1U7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
214 226Right-handed alpha
Helix 2
2
A
253 265Right-handed alpha
Helix 3
3
A
266 268Right-handed 310
Helix 4
4
A
309 316Right-handed alpha
Helix 5
5
A
333 345Right-handed alpha
Helix 6
6
A
385 405Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1U7U. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
230 235parallel
Strand 3
A
190 195parallel
Strand 4
A
270 273parallel
Strand 5
A
323 328parallel
Strand 6
A
349 352parallel
Strand 7
A
366 373anti-parallel
Strand 8
A
376 384anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
206 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il