Analysis of interatomic Contacts of Structural Units in PDB entry:
1U9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1U9J entry

There is 1 chain in PDB entry 1U9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 315THR 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1U9J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
325 338Right-handed alpha
Helix 2
2
A
353 357Right-handed 310
Helix 3
3
A
373 383Right-handed alpha
Helix 4
4
A
394 401Right-handed alpha
Helix 5
5
A
401 410Right-handed alpha
Helix 6
6
A
410 423Right-handed alpha
Helix 7
7
A
432 437Right-handed 310
Helix 8
8
A
458 460Right-handed 310
Helix 9
9
A
461 482Right-handed alpha
Helix 10
10
A
509 522Right-handed alpha
Helix 11
11
A
540 553Right-handed alpha
Helix 12
12
A
554 557Right-handed 310
Helix 13
13
A
574 587Right-handed alpha
Helix 14
14
A
590 594Right-handed 310
Helix 15
15
A
623 631Right-handed alpha
Helix 16
16
A
637 653Right-handed alpha
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There are 4 sheets in PDB entry 1U9J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
362 366first strand
Strand 2
A
341 347parallel
Strand 3
A
316 321parallel
Strand 4
A
385 388parallel
Strand 5
A
426 430parallel
Strand 6
A
485 490parallel
Strand 7
A
561 565parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
493 494first strand
Strand 2
A
538 539parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
525 528first strand
Strand 2
A
600 603parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
534 536first strand
Strand 2
A
571 573anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il