Analysis of interatomic Contacts of Structural Units in PDB entry:
1UCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UCY entry

There are 13 chains in PDB entry 1UCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
THR 1ARG 15
H
ILE 16THR 149
E
SER 149SER 247
F
ASP 7VAL 15
F
PRO 18ARG 19
J
THR 1ARG 15
K
ILE 16SER 247
G
ASP 7VAL 15
G
PRO 18PRO 18
M
THR 1ARG 15
N
ILE 16SER 247
I
ASP 7VAL 15
I
PRO 18ARG 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1UCY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
L
14 14Right-handed alpha
Helix 2
2
H
56 58Right-handed 310
Helix 3
3
H
60 60Right-handed 310
Helix 4
4
H
61 63Right-handed 310
Helix 5
5
H
126 129Right-handed alpha
Helix 6
6
E
165 170Right-handed alpha
Helix 7
7
E
186 186Right-handed 310
Helix 8
8
E
231 242Right-handed alpha
Helix 9
9
F
9 11Right-handed 310
Helix 10
10
J
8 10Right-handed 310
Helix 11
11
J
14 14Right-handed alpha
Helix 12
12
K
56 58Right-handed 310
Helix 13
13
K
60 60Right-handed 310
Helix 14
14
K
61 63Right-handed 310
Helix 15
15
K
126 129Right-handed alpha
Helix 16
16
K
149 149Right-handed 310
Helix 17
17
K
165 171Right-handed alpha
Helix 18
18
K
231 242Right-handed 310
Helix 19
19
M
1 1Right-handed 310
Helix 20
20
M
14 14Right-handed alpha
Helix 21
21
N
56 58Right-handed 310
Helix 22
22
N
60 60Right-handed 310
Helix 23
23
N
126 129Right-handed alpha
Helix 24
24
N
165 171Right-handed alpha
Helix 25
25
N
235 242Right-handed alpha
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There are 12 sheets in PDB entry 1UCY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
81 84first strand
Strand 2
H
64 68anti-parallel
Strand 3
H
30 35anti-parallel
Strand 4
H
39 45anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
51 54first strand
Strand 2
H
104 108anti-parallel
Strand 3
H
85 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
135 140first strand
Strand 2
E
156 161anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
180 183first strand
Strand 2
E
226 230anti-parallel
Strand 3
E
207 215anti-parallel
Strand 4
E
198 202anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
81 84first strand
Strand 2
K
64 68anti-parallel
Strand 3
K
30 35anti-parallel
Strand 4
K
40 45anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
51 54first strand
Strand 2
K
104 108anti-parallel
Strand 3
K
85 90anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
135 140first strand
Strand 2
K
156 161anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
180 183first strand
Strand 2
K
226 230anti-parallel
Strand 3
K
207 215anti-parallel
Strand 4
K
198 202anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
81 84first strand
Strand 2
N
64 68anti-parallel
Strand 3
N
30 35anti-parallel
Strand 4
N
39 45anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
51 54first strand
Strand 2
N
104 108anti-parallel
Strand 3
N
85 90anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
135 140first strand
Strand 2
N
156 161anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
180 183first strand
Strand 2
N
226 230anti-parallel
Strand 3
N
207 215anti-parallel
Strand 4
N
198 202anti-parallel
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