Analysis of interatomic Contacts of Structural Units in PDB entry:
1UEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UEX entry

There are 3 chains in PDB entry 1UEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 127
B
 GLY 3VAL 125
C
 GLU 501PRO 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1UEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
44 59Right-handed alpha
Helix 3
3
A
105 108Right-handed 310
Helix 4
4
B
24 34Right-handed alpha
Helix 5
5
B
46 60Right-handed alpha
Helix 6
6
B
73 77Right-handed 310
Helix 7
7
C
526 542Right-handed alpha
Helix 8
8
C
573 583Right-handed alpha
Helix 9
9
C
593 604Right-handed alpha
Helix 10
10
C
633 644Right-handed alpha
Helix 11
11
C
659 669Right-handed alpha
Helix 12
12
C
680 696Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1UEX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
121 127anti-parallel
Strand 4
A
38 39anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
100 103anti-parallel
Strand 3
A
66 72anti-parallel
Strand 4
B
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 23anti-parallel
Strand 3
B
117 124anti-parallel
Strand 4
B
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 72first strand
Strand 2
B
97 102anti-parallel
Strand 3
B
108 112anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
562 566first strand
Strand 2
C
551 558anti-parallel
Strand 3
C
513 520parallel
Strand 4
C
615 622parallel
Strand 5
C
646 653parallel
Strand 6
C
675 677parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il