Analysis of interatomic Contacts of Structural Units in PDB entry:
1UF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UF5 entry

There are 2 chains in PDB entry 1UF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LEU 303
B
 THR 1LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1UF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 37Right-handed alpha
Helix 2
2
A
52 56Right-handed 310
Helix 3
3
A
60 66Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
144 149Right-handed alpha
Helix 6
6
A
170 175Right-handed 310
Helix 7
7
A
176 186Right-handed alpha
Helix 8
8
A
204 209Right-handed 310
Helix 9
9
A
210 227Right-handed alpha
Helix 10
10
A
278 283Right-handed alpha
Helix 11
11
A
287 292Right-handed alpha
Helix 12
12
A
293 302Right-handed 310
Helix 13
13
B
19 37Right-handed alpha
Helix 14
14
B
52 56Right-handed 310
Helix 15
15
B
60 66Right-handed alpha
Helix 16
16
B
77 88Right-handed alpha
Helix 17
17
B
144 149Right-handed alpha
Helix 18
18
B
170 175Right-handed 310
Helix 19
19
B
176 186Right-handed alpha
Helix 20
20
B
204 209Right-handed 310
Helix 21
21
B
210 227Right-handed alpha
Helix 22
22
B
278 283Right-handed alpha
Helix 23
23
B
287 292Right-handed alpha
Helix 24
24
B
293 296Right-handed 310
Helix 25
25
B
297 302Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1UF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
104 114anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
41 43parallel
Strand 5
A
3 10parallel
Strand 6
A
267 274anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
190 195parallel
Strand 4
A
229 234parallel
Strand 5
A
249 251anti-parallel
Strand 6
A
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
104 114anti-parallel
Strand 3
B
90 101anti-parallel
Strand 4
B
41 43parallel
Strand 5
B
3 10parallel
Strand 6
B
267 274anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
164 168anti-parallel
Strand 3
B
190 195parallel
Strand 4
B
229 234parallel
Strand 5
B
249 251anti-parallel
Strand 6
B
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
242 244anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il