Analysis of interatomic Contacts of Structural Units in PDB entry:
1UJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UJ1 entry

There are 2 chains in PDB entry 1UJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3VAL 303
B
 SER 1GLY 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1UJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
41 44Right-handed 310
Helix 3
3
A
46 51Right-handed 310
Helix 4
4
A
53 60Right-handed alpha
Helix 5
5
A
62 64Right-handed 310
Helix 6
6
A
200 214Right-handed alpha
Helix 7
7
A
226 235Right-handed alpha
Helix 8
8
A
236 238Right-handed 310
Helix 9
9
A
243 250Right-handed alpha
Helix 10
10
A
250 258Right-handed alpha
Helix 11
11
A
260 275Right-handed alpha
Helix 12
12
A
292 301Right-handed alpha
Helix 13
13
B
10 15Right-handed alpha
Helix 14
14
B
41 44Right-handed 310
Helix 15
15
B
47 51Right-handed 310
Helix 16
16
B
53 60Right-handed alpha
Helix 17
17
B
62 66Right-handed 310
Helix 18
18
B
138 142Right-handed 310
Helix 19
19
B
200 214Right-handed alpha
Helix 20
20
B
226 235Right-handed alpha
Helix 21
21
B
236 238Right-handed 310
Helix 22
22
B
243 250Right-handed alpha
Helix 23
23
B
250 256Right-handed alpha
Helix 24
24
B
260 275Right-handed alpha
Helix 25
25
B
292 301Right-handed alpha
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There are 6 sheets in PDB entry 1UJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
35 39anti-parallel
Strand 6
A
86 91anti-parallel
Strand 7
A
77 83anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 167parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
121 129anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 167parallel
Strand 3
A
171 175anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
67 70anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
25 32anti-parallel
Strand 5
B
35 39anti-parallel
Strand 6
B
86 91anti-parallel
Strand 7
B
77 83anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
156 166parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
111 118anti-parallel
Strand 5
B
121 129anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
156 166parallel
Strand 3
B
172 175anti-parallel
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