Analysis of interatomic Contacts of Structural Units in PDB entry:
1UJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UJ2 entry

There are 2 chains in PDB entry 1UJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 19GLY 231
B
 GLU 19GLY 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1UJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 44Right-handed alpha
Helix 2
2
A
45 49Right-handed 310
Helix 3
3
A
50 54Right-handed 310
Helix 4
4
A
62 65Right-handed 310
Helix 5
5
A
69 78Right-handed alpha
Helix 6
6
A
85 89Right-handed 310
Helix 7
7
A
90 103Right-handed alpha
Helix 8
8
A
142 149Right-handed alpha
Helix 9
9
A
158 174Right-handed alpha
Helix 10
10
A
177 188Right-handed alpha
Helix 11
11
A
188 197Right-handed alpha
Helix 12
12
A
198 204Right-handed 310
Helix 13
13
A
211 213Right-handed 310
Helix 14
14
A
214 231Right-handed alpha
Helix 15
15
B
32 44Right-handed alpha
Helix 16
16
B
45 49Right-handed 310
Helix 17
17
B
50 54Right-handed 310
Helix 18
18
B
62 65Right-handed 310
Helix 19
19
B
69 78Right-handed alpha
Helix 20
20
B
85 89Right-handed 310
Helix 21
21
B
90 103Right-handed alpha
Helix 22
22
B
142 147Right-handed alpha
Helix 23
23
B
158 174Right-handed alpha
Helix 24
24
B
177 188Right-handed alpha
Helix 25
25
B
188 196Right-handed alpha
Helix 26
26
B
197 204Right-handed 310
Helix 27
27
B
214 231Right-handed alpha
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There are 4 sheets in PDB entry 1UJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
131 135parallel
Strand 3
A
21 26parallel
Strand 4
A
151 156parallel
Strand 5
A
206 209parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 113first strand
Strand 2
A
118 126anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
131 135parallel
Strand 3
B
21 26parallel
Strand 4
B
151 156parallel
Strand 5
B
206 209parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 113first strand
Strand 2
B
118 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il